Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  164 bits (416), Expect = 5e-46
 Identities = 92/165 (55%), Positives = 113/165 (68%), Gaps = 2/165 (1%)

Query: 1   MPPAEPSL-NLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGN 59
           MP  E +L   +VQTLY+ HHGWL  WL +KLG + +AADLAHDTFVRLLS+   P    
Sbjct: 1   MPAGEFALPQHEVQTLYSNHHGWLHAWLRKKLGCSHNAADLAHDTFVRLLSKT-EPVAAA 59

Query: 60  EPRALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLR 119
           EPRA L  IA GLVVD  RR+ +ERAYL+ +A LP+P++PS E R ++LE L  ID ML 
Sbjct: 60  EPRAYLATIAHGLVVDFHRRRALERAYLDTLAALPEPQLPSLEARAIVLEALVAIDTMLD 119

Query: 120 DMPARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164
            M   VRQ F+LSQLDGLTYA+IA +L VS+ T+   M  A   C
Sbjct: 120 GMKPPVRQAFMLSQLDGLTYAEIAARLGVSVRTVNNYMLKALEHC 164