Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 170 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score =  134 bits (336), Expect = 1e-36
 Identities = 68/157 (43%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 6   PSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALL 65
           P+    +  LY EH  WLQGWL R+LG+   AADL  DTFVR++S  G      EPRA L
Sbjct: 4   PAATAPIDALYREHRDWLQGWLRRRLGDGHTAADLTQDTFVRVISG-GQAQAIQEPRAYL 62

Query: 66  THIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARV 125
           T +A+ ++ + WRR+++ERA+L+A+A  PQ   PSPET  L+ E +  ID  L  +P +V
Sbjct: 63  TTLAQRVLYNFWRRRELERAWLDALAAQPQELAPSPETYALVREAVETIDRWLDGLPPKV 122

Query: 126 RQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFL 162
           R+ FLL +L+GL +A IA ++ +S+ +++R ++ A +
Sbjct: 123 REAFLLRRLEGLAHADIAVRMGISITSVERYVKQAIV 159