Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 68.2 bits (165), Expect = 7e-17
 Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 15  LYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLTHIAKGLVV 74
           L T ++  L  +  R L N   AAD+  +++ R+L+ + +     +PRALL   A+ ++V
Sbjct: 1   LVTRYYRELLNFCARALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMV 60

Query: 75  DRWRRQDV-ERAYLEAIAHLPQPEVPS---PETRWLILETLYRIDAMLRDMPARVRQVFL 130
           D+ RR  + E   L A++   QP +P+   P+      + +    A +  +P R R+ F+
Sbjct: 61  DQHRRNLLREHDDLAALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAFV 120

Query: 131 LSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSIE 168
           L   DGL++A+IA ++  S+  I++ +    LAC + E
Sbjct: 121 LHVFDGLSHAEIAARMGASVSMIEKHVARGRLACRACE 158