Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 171 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

 Score = 67.8 bits (164), Expect = 9e-17
 Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 7/144 (4%)

Query: 19  HHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFG--NEPRALLTHIAKGLVVDR 76
           H+  L+  L RKLGNA DA D  HDT++RL   +GN   G    P A L+ +A  + VD 
Sbjct: 16  HYASLKQRLTRKLGNADDAGDALHDTWLRL---KGNEDHGTVQNPGAYLSRMAVNIAVDV 72

Query: 77  WRRQD--VERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVRQVFLLSQL 134
            RRQ   +    +E +    +   P P     I   L  +  +L  MP R R V LL   
Sbjct: 73  QRRQSRLLSGDEVEELLEEIEDPAPGPARTAEIRSDLDAVLTLLDRMPERRRAVALLVHA 132

Query: 135 DGLTYAQIAEQLQVSLITIKRDMR 158
           +GLT  + A++L VSL T++ +++
Sbjct: 133 EGLTQNEAAQRLGVSLRTVEYELK 156