Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  161 bits (408), Expect = 5e-45
 Identities = 85/161 (52%), Positives = 114/161 (70%), Gaps = 8/161 (4%)

Query: 12  VQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLS-------RQGNPYFGNEPRAL 64
           +QTLY +HHGWLQGWL +KLGNA DAADLA DTF+R+L+       +QG+     EPRA 
Sbjct: 12  IQTLYCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQGDWQL-REPRAY 70

Query: 65  LTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPAR 124
           LT +AK L+ + +RR+ +E+AY EA++ LP+P+ PSPE + +ILETL  IDAML  +   
Sbjct: 71  LTVVAKRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEIDAMLDGLAPP 130

Query: 125 VRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACL 165
           VR+ FL++QL+GL YA+IA  L VS  T+KR M  A   C+
Sbjct: 131 VRRAFLMAQLEGLGYAEIAATLGVSERTVKRYMAEAMARCI 171