Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 78.6 bits (192), Expect = 6e-20
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 15  LYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLTHIAKGLVV 74
           ++T ++  L  +LGR + +   AADL  +++ R+L  Q N     +PRALL   A+ L++
Sbjct: 1   VFTRYYRELLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDPRALLYRTARNLLI 60

Query: 75  DRWRRQDVERAYL----------EAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPAR 124
           DR R   V RA L          E ++ L  P    PE      + +  +   + ++P R
Sbjct: 61  DRHRHDQVRRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVR 120

Query: 125 VRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164
            RQ F+L + +GL++A++AE++ +++  +++ ++    AC
Sbjct: 121 CRQAFMLHKFEGLSHAEVAEEMGITVKMVEKHIKMGLQAC 160