Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  135 bits (341), Expect = 3e-37
 Identities = 73/166 (43%), Positives = 101/166 (60%)

Query: 3   PAEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPR 62
           P+ P+    ++ LY  HHGW++ WL RKLGNA DAA+LA D FVRLLS+          R
Sbjct: 5   PSAPAPGFDLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHAR 64

Query: 63  ALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMP 122
           A L  +++   VD WRR+ VE+AYLE +A  P+   PS E + +ILETL ++ AM   MP
Sbjct: 65  AYLGRMSRNACVDFWRRRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMP 124

Query: 123 ARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSIE 168
            RV + F ++QL G+   +IAEQL VS  ++   +  A   CL +E
Sbjct: 125 QRVAEAFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQCLLLE 170