Pairwise Alignments

Query, 352 a.a., putative ABC transporter permease protein from Pseudomonas putida KT2440

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  190 bits (483), Expect = 4e-53
 Identities = 114/338 (33%), Positives = 183/338 (54%), Gaps = 25/338 (7%)

Query: 8   RLLLIIPTLLAILLVNFAIVQAAPGGPVEQAVARLQGLGGGAPGARAEVVHGESRATRGL 67
           RLL  +  +LA++++NF +V AAPG PVE           GA G              G+
Sbjct: 13  RLLQALGLVLAVVVLNFVLVHAAPGDPVETIA--------GASG--------------GM 50

Query: 68  DPKLIEEIKRQYGFDKSAPERLWLMLGQYARLDFGNSFFRGAKVTDLILDKLPVTLSLGF 127
            P+L+ +++ QYG DKS P +L + LG+ A+ D G S+F    VT +I ++LP TL L  
Sbjct: 51  SPELMAQLRTQYGLDKSLPVQLAVYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVL 110

Query: 128 WATLITYLVSIPLGIRKAMRHGSRFDAWSSALIVIGYALPSFLFALLLIVLFAGGTSLNW 187
            + L+ +     LG+  + +       + + L ++G+A P F   ++L++L A    +  
Sbjct: 111 SSVLLAFFAGTALGVLSSRKPNGWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPI-- 168

Query: 188 FPVRGLVSDNFDELSLLGKVADYFWHLVLPVAALVIGGFATLTLLTKNAFLDEVSRQYVV 247
            PV G+ S +         + D   HLVLP   L +   A  + L +++ LD +   ++ 
Sbjct: 169 LPVAGMRSIDSTGAGGFADMLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIR 228

Query: 248 TARAKGLSERRVLYGHVLRNAMLLVVAGLPQALITVFFAGSLLIEVIFSLDGLGRMSYEA 307
           TARAKGL++R VLY H LRNA+L VV  L      V  AG++L+E +F+  GLGR+++E+
Sbjct: 229 TARAKGLADRVVLYKHALRNALLPVVTVLGLQFGNV-LAGAILVETVFNWPGLGRLAFES 287

Query: 308 AVSRDYPVVFGTLFIFTLAGLLIRLIGDLSYTLLDPRI 345
            + RDYP + G L   ++  +++  + DL Y  +DPRI
Sbjct: 288 VLRRDYPTILGVLLFSSIVVVVMNQLTDLCYRFIDPRI 325