Pairwise Alignments

Query, 352 a.a., putative ABC transporter permease protein from Pseudomonas putida KT2440

Subject, 329 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  160 bits (405), Expect = 4e-44
 Identities = 113/339 (33%), Positives = 164/339 (48%), Gaps = 26/339 (7%)

Query: 7   RRLLLIIPTLLAILLVNFAIVQAAPGGPVEQAVARLQGLGGGAPGARAEVVHGESRATRG 66
           RR +  IP LL +L+  F +++ A G  V+   A L  +GGG  G R             
Sbjct: 10  RRAISAIPVLLIVLIFTFVLLENASGDAVD---AYLVSIGGGDAGLR------------- 53

Query: 67  LDPKLIEEIKRQYGFDKSAPERLWLMLGQYARLDFGNSFFRGAKVTDLILDKLPVTLSLG 126
                 + ++ QYG + S   R WL      RLDFG S      V  LIL++LP TL L 
Sbjct: 54  ------DALREQYGLNGSMLARFWLYASSVLRLDFGWSLAFDRPVLGLILERLPNTLLLM 107

Query: 127 FWATLITYLVSIPLGIRKAMRHGSRFDAWSSALIVIGYALPSFLFALLLIVLFAGGTSLN 186
             AT + +++   LGI    R G   D   S L +  YA P F   L+L ++FA    L 
Sbjct: 108 GSATALAFILGTTLGIVAGARPGGLMDRVLSTLSLALYATPGFWLGLVLAIVFA--VQLR 165

Query: 187 WFPVRGLVSDNFDELSLLGKVADYFWHLVLPVAALVIGGFATLTLLTKNAFLDEVSRQYV 246
           W P  G+ +    +     +  D   HLVLPVA+L +   A    + + A        +V
Sbjct: 166 WLPTSGIETIASGKQG-FARALDIARHLVLPVASLGLIYLALFLRVMRTAMAAIWPLDFV 224

Query: 247 VTARAKGLSERRVLYGHVLRNAMLLVVAGLPQALITVFFAGSLLIEVIFSLDGLGRMSYE 306
           + A AKGLS RR++  HV RNA L +V  L     T+   GS++IE +F++ G GR++ E
Sbjct: 225 LFAEAKGLSRRRIVLRHVARNAALPLVTVLGLQAATM-LGGSVVIESVFAIPGFGRLAQE 283

Query: 307 AAVSRDYPVVFGTLFIFTLAGLLIRLIGDLSYTLLDPRI 345
           A   RD P++ G +    +  +L+ L  D+ Y + DPRI
Sbjct: 284 AVSGRDTPLLMGIILTSAVFVILVNLAVDILYAVFDPRI 322