Pairwise Alignments

Query, 347 a.a., Pyocin R2_PP, tail formation from Pseudomonas putida KT2440

Subject, 335 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score = 87.8 bits (216), Expect = 4e-22
 Identities = 85/318 (26%), Positives = 141/318 (44%), Gaps = 26/318 (8%)

Query: 3   PTYQIVADGSDITALINDRLLLLRTSDKPGMESDEFELRIDDRDQAVALPARGSNVVVMM 62
           P  +I  D +   AL+N+RLL    +D  G  SD+ +L +D  +    LP  G ++ + +
Sbjct: 7   PVVEIYGDNA---ALLNERLLEWEHTDLAGFVSDQLKLTLDI-EGLEGLPGLGGHIGLRV 62

Query: 63  GYEGQGLTRLGAYTVDEVELSGPPDTIVIRGKASDM-RGSGKTVRSGSWENVPLSQIVGE 121
           GY   GL   G + + +   S  P  +V+   A+       K  R+ S   + L  +  +
Sbjct: 63  GYRESGLVDKGRFKITQRTPSLFPLRVVLVATAAPFDEPEFKKRRTASHGPISLGALFRQ 122

Query: 122 IAKRNGWEVSCPVDTK---VERVDQRNESDYNFVTRLAKQYDCTAKVAESKLLVMPRQGG 178
           +  R+G+      D +   ++ +DQ NESD  F+TRLAK++D  AK  + +L V+ R+G 
Sbjct: 123 LTTRHGFSPRVAHDLEGEQIQHIDQTNESDMAFLTRLAKRFDAVAKPVD-ELYVLGRKGQ 181

Query: 179 -QSTTGKALAVVTINKTYVSR--------YQFRLGDRNSQKAVKTQHQDPKTGKLQVVEL 229
            +S +GK L  V ++ T  +R          F    R +    + +  D   GK  VVE+
Sbjct: 182 IKSLSGKVLPDVQLSITRDNRPGDRAFVSASFTETSRATYSGAQARWWDAAAGKQHVVEV 241

Query: 230 ANDESPDGLPPVHTDRHVYPNKTSAQQAAKARLAAFNRSTAGVRLEMPGRTDLFAERSIN 289
                  G  P       Y ++  A+ AA+  +    R    V +  PG     AE  + 
Sbjct: 242 -------GGAPFKVMTQRYQSEAEARTAAEGEMRRVGREGLQVSVICPGNPSFGAEGLLL 294

Query: 290 AQGFKPG-LDGEYLVDGV 306
                PG + G + +D V
Sbjct: 295 LDESWPGFMRGRWSIDSV 312