Pairwise Alignments

Query, 301 a.a., Tn4652, transposase subunit B from Pseudomonas putida KT2440

Subject, 295 a.a., IS3 family transposase from Escherichia coli ECRC100

 Score =  322 bits (824), Expect = 9e-93
 Identities = 168/297 (56%), Positives = 209/297 (70%), Gaps = 4/297 (1%)

Query: 5   LIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDEELAVQIHRVWQENY 64
           L+DK R+ +GV P+C  L ++PS Y     +     +RSARA  D+ L  +I RV+ EN+
Sbjct: 3   LLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENH 62

Query: 65  EVYGARKVWRQMHREHQVVARCTVERLMREMGLCGVTRGKTVKTTQPDPDNANPRDLVKR 124
           +VYG RKVWRQ+ RE   VARCTV RLM  MGL GV RGK V+TT      A   D V R
Sbjct: 63  QVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVA-AGDRVNR 121

Query: 125 QFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEFVLDALEQAL 184
           QF AERP+QLWVADFT+VSTWQGF YVAFI+DV++ +IVGWRVS  M T FVLDALEQAL
Sbjct: 122 QFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQAL 181

Query: 185 HTRRPEPHRLVHHSDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAETINGLYKTE 244
             RRP     +HHSD+GSQY+S+ Y+ERL EAG+  S G+TGDSYDNA+AE+INGLYK E
Sbjct: 182 WARRPS--GTIHHSDKGSQYVSLAYTERLKEAGLLVSTGSTGDSYDNAMAESINGLYKAE 239

Query: 245 LIHKRGPWKSVDSLEWETLKWVTWFNHQRLLEPIGNRPPAEFEALYEQSQATISVAA 301
           +IH++  WK+   +E  TL WV W+N++RLL  +G+ PPAE E  Y  S     +AA
Sbjct: 240 VIHRKS-WKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA 295