Pairwise Alignments

Query, 270 a.a., exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI from Pseudomonas putida KT2440

Subject, 261 a.a., Exodeoxyribonuclease III (EC 3.1.11.2) from Variovorax sp. SCN45

 Score =  152 bits (385), Expect = 5e-42
 Identities = 100/269 (37%), Positives = 144/269 (53%), Gaps = 12/269 (4%)

Query: 1   MKIVCFNINGLRARPHQLAALIEKHQPDVIGLQETKVSDDQFPLADVQALGYHVHYHGQK 60
           MKI  +N+N L AR   +   +  +  DV+ LQE K++DD+FPL  +++ GY     GQK
Sbjct: 1   MKIATWNVNSLTARLQHVLDWLIANPVDVLCLQELKMTDDKFPLEVLKSAGYEAAVFGQK 60

Query: 61  GHYGVALLSRQPPLSLHKGFATDEEDAQRRFIWGTFADANGSPITIMNGYFPQGESRDHP 120
            + GVA+LS  P   + K      +D Q R I  T  D    P+ ++NGYF  G++    
Sbjct: 61  TYNGVAILSLSPMRDVVKNIGGFTDD-QSRVIAAT-VDTPSGPLRVVNGYFVNGQA-PGS 117

Query: 121 TKFPAKQRFYSDLQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSF 180
            KF  K ++   L+  L  +   +  ++++GD NI+P+D D    P   K  +       
Sbjct: 118 DKFEYKMKWLDALRDWLRQEMAANPNLVLLGDFNITPEDRD-SFDPVGLKETI-----HH 171

Query: 181 LPEEREWMERLKGWGLVDSFRHLYPDVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQQL 240
             EER   + L   GL DSFR ++      FSW+DYR  G+  +  RGLRID I+ S+ L
Sbjct: 172 TTEERNHFKALLDLGLTDSFR-MFEQPEKSFSWWDYRMLGY--QKNRGLRIDHILVSEPL 228

Query: 241 VPRIKAAGVDYELRGMEKPSDHAPIWLEL 269
           VPR+K   VD   R  EKPSDHAP+ L+L
Sbjct: 229 VPRVKGCVVDRVPRKWEKPSDHAPVVLDL 257