Pairwise Alignments

Query, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

Subject, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score =  176 bits (447), Expect = 1e-49
 Identities = 105/174 (60%), Positives = 128/174 (73%), Gaps = 7/174 (4%)

Query: 1   MHDLDDHQWRELLARLRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFT 60
           MH+LD+ Q REL+ RLRRFAV LTR   SADDLVQ+T+ERA+     +R    LRAWLF+
Sbjct: 1   MHELDE-QLRELIPRLRRFAVSLTRNASSADDLVQSTLERAIISWADKRVEGDLRAWLFS 59

Query: 61  ILYRQFLDGKRRERLHARWLSWF-GRNEHDDEPVGDNLETIVLAQADLQAFARLTAEQRA 119
           ILYRQFLD  RR R +AR L +F GR+  D +P   ++E  V+AQ+ LQAF +L  EQRA
Sbjct: 60  ILYRQFLDAHRRTRRYARMLEFFTGRD--DAQP---SVERTVIAQSTLQAFDQLNTEQRA 114

Query: 120 LLLLVSIEGLSYKEAAQALGIPIGTVMSRLSRARNALRELTEGNPQPPALRRLK 173
           LLL VS+EGLSYKE A+ L +PIGTVMSRLSRAR ALR L++G    P+LR LK
Sbjct: 115 LLLWVSVEGLSYKEIAEILEVPIGTVMSRLSRARQALRLLSDGEIASPSLRILK 168