Pairwise Alignments

Query, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Xanthobacter sp. DMC5

 Score = 73.2 bits (178), Expect = 9e-18
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 32/305 (10%)

Query: 6   RVTGLCAALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEY--N 63
           ++  L  AL A     A AA+++VV  +GG+ +    EAI   F    G   ++ EY   
Sbjct: 4   KIVALGLALAAFVAGPASAAEKLVVSTWGGSFRDLIAEAIASKFTKDTG---VEVEYITG 60

Query: 64  GEMARI-QVMADTGNVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELIPAAAQD-- 120
           G + R+ +     G+ + D+            ++ ++E LD  ++ +A++L+P A     
Sbjct: 61  GTIDRLNKAKLAKGSPESDITFTTAHVGWLYANDDLFETLDLSKMPNASKLVPQAKVSPY 120

Query: 121 -CGSAALVWSVAIAYDRSKLAQAPASWADFWDVDKYPGKRGLRKRAVYNLEF-----ALL 174
             G+ A V+++    D +      +SWAD W+    P  +G+     ++        ALL
Sbjct: 121 HIGAWAYVYTIGYRPDLTPKNINFSSWADLWN----PELKGMLAAPDFDPSHIIAVSALL 176

Query: 175 ADGVKVEDVYRVLSTPAGVERAFAKLSELKPHIQ-WWDAGAQPAQWLAAGDVVMTSTYSG 233
           A G           +PA  ++   KL  LKP+ + ++   A   Q +A G+  +    S 
Sbjct: 177 AGG-----------SPADWQKGEQKLLALKPNFKAFYTNDANSQQLIATGETPVQIMLSM 225

Query: 234 RIAVAAQQGSPLAVVWP--GSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDTQVRYVQQI 291
                  QG P+ +V P  G + G+D  AI+KGS++ + A++ I  A  P+ Q +  +  
Sbjct: 226 NAYYMIAQGVPIKLVIPKEGGVLGIDTMAIMKGSKNRELAEKFINTALDPEVQGKIAELK 285

Query: 292 PYGPT 296
              PT
Sbjct: 286 KGSPT 290