Pairwise Alignments

Query, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 73/323 (22%), Positives = 136/323 (42%), Gaps = 29/323 (8%)

Query: 10  LCAALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNGEMARI 69
           LCAA+++ G+++A+     V   +     KA ++     F AQ+ +  +  +       +
Sbjct: 9   LCAAVIS-GMAHAEEKTLRVYNWFDYITPKALED-----FKAQNPTIKLVYDIFDTNEAL 62

Query: 70  QVMADTGNVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELIPAA-----AQDCGSA 124
           +    TGN  +DVV      L +  + G+++ LD  +L +   L P       A D G+ 
Sbjct: 63  EAKLLTGNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLIEANDPGNK 122

Query: 125 ALV----WSVAIAY--DRSKLAQAPASWADFWD-VDKYPGKRGLRKRAVYNLEFA--LLA 175
             V     ++ I +  D+ K A    +  D WD + K      L++  V  L+    +L 
Sbjct: 123 FAVPYMYGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDSPSEILP 182

Query: 176 DGVKVEDVYRVLSTPAGVERAFAKLSELKPHIQWWDAGAQPAQWLAAGDVVMTSTYSGRI 235
             ++   +    S P    +A A L +++P++ ++ +    A  +A GD+ +   YSG  
Sbjct: 183 LALQHLGLDPNSSNPKDYAKAEALLLKIRPYVTYFHSSKYMAD-IANGDICVAVGYSGSF 241

Query: 236 AVAAQQGSP--------LAVVWPGSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDTQVRY 287
           + AA +           + +   G+    D  AI KG+++   A   I Y  QP      
Sbjct: 242 SQAANRARDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQVIAPI 301

Query: 288 VQQIPYGPTNTQAAARLDPALAN 310
              + Y   N  A  ++DP++ N
Sbjct: 302 SDFVGYPNPNKDATEQVDPSIRN 324