Pairwise Alignments

Query, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 365 a.a., ABC transporter, substrate binding protein (putrescine) from Agrobacterium fabrum C58

 Score = 64.3 bits (155), Expect = 5e-15
 Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 38/326 (11%)

Query: 10  LCAALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNG-EMAR 68
           L  AL+A G   +  AQ+ VV  Y  +     D  I + F  + G +++   Y+G E+  
Sbjct: 12  LTTALVAAG---SAMAQEKVVHVYNWSDYI--DPVILEDFTKETGIKVVYDVYDGNEVLE 66

Query: 69  IQVMADTGNVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELIP-----AAAQDCGS 123
            +++A  G+  +DVV    P L R    G+Y++LD  +L +     P      A  D G+
Sbjct: 67  TKLLA--GSSGYDVVAPTSPFLARQIKAGVYQKLDKSKLPNLKNAWPDITERLAKYDPGN 124

Query: 124 AALV---W-SVAIAYDRSKLAQAPASW-ADFWDVDKYPGKRGLRKRAVYNL------EFA 172
              V   W +  I Y+ +K+  A      D WDV   P      K    N+       FA
Sbjct: 125 EYAVNYMWGTTGIGYNVAKVKAALGDVPVDSWDVLFKPENAEKLKSCGINILDASDETFA 184

Query: 173 LLADGV-KVEDVYRVLSTPAGVERAFAKLSELKPHIQWWDAGAQPAQWLAAGDVVMTSTY 231
           +  + + K  D        AG E      S+++P+++ +++       LA GD  ++  +
Sbjct: 185 IAMNYLGKNPDSKETADLEAGGE----VYSKIRPYVKTFNSSPYIND-LANGDTCISIGW 239

Query: 232 SGRIAVA------AQQGSPLAVVWP--GSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDT 283
           SG I  A      A+ G  +  V P  G+   MD +AI   +++VD+A   I Y  +P+ 
Sbjct: 240 SGDILQAKTRAEEAKNGVEVNYVIPKEGTYIWMDSFAIPADAKNVDEAHAFINYMMKPEV 299

Query: 284 QVRYVQQIPYGPTNTQAAARLDPALA 309
             +    + Y   N  + A +DP++A
Sbjct: 300 AAKASDYVQYANGNLPSQALMDPSVA 325