Pairwise Alignments

Query, 292 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 17/225 (7%)

Query: 55  FAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRNLRRSLIRELM 114
           + P S++ +++ +RG      R+ LI  +  L++    P  G  LP      +SL    +
Sbjct: 68  YKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVD--MPQLGRPLP------KSLSEADV 119

Query: 115 DVCAADP---RPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVGKGNHQLV 171
           +   A P      G RD A++ +LY  G+R +E + + L+QV+     L+V+GKG+ + +
Sbjct: 120 EALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERL 179

Query: 172 KYAPPWAFEKLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHITRARITKHAIYYIARQRG 231
                 A   ++ ++   R +L  G   D  LF  + RG  +TR     H I + A+  G
Sbjct: 180 VPMGEEAIVWVERYMRDARSELLGGRPSD-VLFPSL-RGEQMTRQTFW-HRIKHQAKVAG 236

Query: 232 AQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIY 275
             +G  + PH  R AF T ++    DL + Q L  H+++ TT IY
Sbjct: 237 --IGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279