Pairwise Alignments

Query, 292 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 304 a.a., integrase from Pseudomonas simiae WCS417

 Score =  463 bits (1191), Expect = e-135
 Identities = 226/291 (77%), Positives = 253/291 (86%)

Query: 1   MARLAPSSQQTMRYILQDAADRLGFVDCNIVDVPWHRLEPGHVIALVAALRADGFAPNSS 60
           + RLAPSSQ TMRY+LQDAADRLGF D N+ D+ WH L+P HVIALVAALR DG+APN+S
Sbjct: 13  LTRLAPSSQLTMRYVLQDAADRLGFEDINLEDIDWHLLQPEHVIALVAALREDGYAPNTS 72

Query: 61  SLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRNLRRSLIRELMDVCAAD 120
           SLYVNA+RGVMNEAWR  LI  E LLR+R VK A G+RL  GRNLRRSLIRE+M+VCAAD
Sbjct: 73  SLYVNAVRGVMNEAWRLNLISQEHLLRMRTVKAAPGTRLSQGRNLRRSLIREMMEVCAAD 132

Query: 121 PRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSLQVVGKGNHQLVKYAPPWAFE 180
           PRPQG+RDAA+I +LYG+GMRKSESV++DL Q++FE RSL+V+GKGN +L+KYAP WAF 
Sbjct: 133 PRPQGLRDAAVIGILYGSGMRKSESVNLDLAQINFEERSLRVIGKGNKELIKYAPDWAFA 192

Query: 181 KLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHITRARITKHAIYYIARQRGAQVGVKIMP 240
           KLQAWL  RR+ L  G  DD FLFNRIRRG+HITR RITKHAIYYIARQRG QVGVKIMP
Sbjct: 193 KLQAWLAFRREQLKEGEHDDSFLFNRIRRGSHITRERITKHAIYYIARQRGQQVGVKIMP 252

Query: 241 HDFRRAFITRVIEEHDLSIAQKLAHHANIQTTAIYDRRDDNERRRAVDRFD 291
           HDFRR+FITRVIEEHDLSIAQKLAHH NIQTTA YD RDDNERRRAVDRFD
Sbjct: 253 HDFRRSFITRVIEEHDLSIAQKLAHHTNIQTTASYDVRDDNERRRAVDRFD 303