Pairwise Alignments

Query, 292 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 294 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 56/253 (22%), Positives = 109/253 (43%), Gaps = 16/253 (6%)

Query: 41  GHVIALVAALRADGFAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLP 100
           G + A +  L   G +  + +  +  +R       R G I  +   ++R +K  T  +LP
Sbjct: 49  GEIRAWIVDLVEQGLSATTVNRKMATLRSFYKFLLRSGEITKDPTYKLRALK--TSKKLP 106

Query: 101 PGRNLRRSLIRELMDVCAADPRPQGVRDAAIIALLYGTGMRKSESVDIDLDQVDFEARSL 160
               ++ S + +L++    +   +G RD  ++  LY TG+R SE + +    +D + +++
Sbjct: 107 --EFVQESTMDQLLNDLEYEAGFEGQRDKMVMEFLYLTGVRLSELIGLTWKDIDIQGKTV 164

Query: 161 QVVGKGNHQLVKYAPPWAFEKLQAWLELRRQDLPAGAEDDPFLFNRIRRGNHITRARITK 220
           +V GK   Q +        E + ++ +  ++      E D F+         I++ +   
Sbjct: 165 KVYGKRKKQRIIPLTNTLIENIISYKKDFKETFSNVNESDYFIVT-------ISKKQAYP 217

Query: 221 HAIYYIARQ---RGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHHANIQTTAIYD 276
             IY I R+     AQ   K  PH  R  F T ++ +  DL+  + L  HAN+  T +Y 
Sbjct: 218 MIIYRIVRKYLDLFAQTS-KRSPHLLRHTFATHLLNKGADLNAVKDLLGHANLAATQVYT 276

Query: 277 RRDDNERRRAVDR 289
                + +   D+
Sbjct: 277 HNSMEKLKAVFDQ 289