Pairwise Alignments

Query, 292 a.a., Site-specific recombinase, phage integrase family from Pseudomonas putida KT2440

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score = 66.6 bits (161), Expect = 7e-16
 Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 24/249 (9%)

Query: 45  ALVAALRADGFAPNSSSLYVNAIRGVMNEAWRQGLIDHEQLLRIREVKPATGSRLPPGRN 104
           A +  L A GFA  S +  ++++R      + +GL   +    I    P  G  LP  + 
Sbjct: 63  AYLTHLAAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDA--PRKGLALP--KT 118

Query: 105 LRRSLIRELMDVCAADPRPQG------VRDAAIIALLYGTGMRKSESVDIDLDQVDFEAR 158
           +  + +  L+ + A +   +G      +R   ++ LLY TGMR SE V + +  +  E R
Sbjct: 119 MSVADVNRLLGLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGR 178

Query: 159 SLQVVGKGNHQ---LVKYAPPWAFEKLQAWLELRRQDLPAGA--------EDDPFLFNRI 207
            L + GKGN     L+  A   A EK +A  +   Q+    A         + P+LF   
Sbjct: 179 FLMIRGKGNKDRMVLLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSN 238

Query: 208 RRGNHITRARITKHAIYYIARQRGAQVGVKIMPHDFRRAFITRVIEE-HDLSIAQKLAHH 266
            +  H+ R ++    +  IA + G      + PH  R AF + +++   DL   Q+L  H
Sbjct: 239 SKEGHLPR-QVFARDLKDIAIRAGLTASA-VSPHVLRHAFASHLLQNGADLRAVQELLGH 296

Query: 267 ANIQTTAIY 275
           ++I TT IY
Sbjct: 297 SDISTTQIY 305