Pairwise Alignments

Query, 323 a.a., Transcriptional regulator, LysR family from Pseudomonas putida KT2440

Subject, 333 a.a., Pca operon transcriptional activator PcaQ from Variovorax sp. SCN45

 Score =  110 bits (275), Expect = 5e-29
 Identities = 83/314 (26%), Positives = 141/314 (44%), Gaps = 5/314 (1%)

Query: 3   PDMTHSSFCNWIRYKHLVLIDTLARTRNMHATATRMNLSQPALSKMLRDLEEQFGFALFE 62
           P      F   ++ +HL  +  +A+ R++   A R+ LSQPA+SK L +LE   G  L E
Sbjct: 4   PTDLRQDFVRNVQLRHLRCLVAVAQERHLARAAERLALSQPAVSKTLSELEAIVGTRLVE 63

Query: 63  RLPRSMPP----TELGEYVVRYAQGALAESQQFVDQVNRLRNGGHGFIRVGGIFAATALV 118
           R           T  GE ++ +A   L         V     G    +R+G + +    +
Sbjct: 64  RSKAGRRGVQGLTAAGEQLLAHALRVLEALDASAQAVAPAAGGRIERLRIGALPSVAPAL 123

Query: 119 LPQAIAAIKARSPLLSIEVVEHSSDHLLTMLEQNKLDIMIGRFTEERFGQLFDFQPLEPE 178
           LPQA+A ++   P + I V   ++  LL  L   +LD+++GR ++ R      F+ L  E
Sbjct: 124 LPQALARLRDGWPQVQIVVKSAANAALLDELRAGELDLVVGRMSDPRLMGGLSFELLHTE 183

Query: 179 PFSLVVNSEHPLNQLDNTPLEALGDWPWVLYPVGTPIRNRLEQAFRVAGIATPADCVETI 238
           P    V + HPL  L    ++A+  +P V+Y  GT  R+  E      G+  P + ++T+
Sbjct: 184 PLVFAVRAGHPL-ALKAASVQAVLGYPLVVYGEGTIPRHNTESFLSARGLVLPTNALQTL 242

Query: 239 SMPMFLQLLQSAPMIAMLPRSMVAAQLASGQFKELRSPLQVPALEYGVVTRKDEPLSASA 298
            + +   L+  +  + + P      +LA G+  +LR          G++ R D   SA  
Sbjct: 243 DVAVARALVAVSDAVWITPLGAARGELADGRLVQLRIETAGTEEPVGLLQRSDAEPSALR 302

Query: 299 RAFVEILLEGAQRR 312
            A   +L E A+ +
Sbjct: 303 AAMAVLLREAAREQ 316