Pairwise Alignments

Query, 452 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

Subject, 475 a.a., DNA-binding protein from Pseudomonas simiae WCS417

 Score = 77.0 bits (188), Expect = 1e-18
 Identities = 95/381 (24%), Positives = 152/381 (39%), Gaps = 22/381 (5%)

Query: 12  YRKVYRYLEALIEQAAGVGTCRLPSLRELSRRLRVSLATVQSAYSLLEEEGRVHCLPRSG 71
           Y+++YR     I+Q       R+PS+R +++ L+V+  TV++AY LL  EG      ++G
Sbjct: 7   YQEIYRRFRQAIDQGQLRPGERVPSVRAMAQELKVARGTVEAAYQLLVSEGFFEARGQAG 66

Query: 72  YYV-----QNGGKDQAVAL-ARQPPLPTQ---PLLERMLLGHERRLARQRDR-----SVA 117
             +     Q   K    AL     PLP Q   P L+        RL  Q+ R     S+A
Sbjct: 67  TVIAEALPQVPMKPMPAALPVTSGPLPLQMGLPALDAFPRKLWARLVTQQVRRTDANSLA 126

Query: 118 SWEALGSARLRNAVAERYTRCSNQYWHADDVHLAPDVLALLETLLAALALQGGTALVHSP 177
             +  G+  LR A+A               V +       L  +  ALA+ G       P
Sbjct: 127 MGDERGTQALRVAIASYLALYRGVECTPQQVFVCAGYAGGLTLVCEALAMAGQRCWFEDP 186

Query: 178 CCWQVLRALARAGMRVLEAPLDARGNPELHALAKLLGSEPVSLLIMPSCLGMPQGRLVSP 237
                 + L   G+ ++  P+D  G      +++  G E    ++ P+    P G  +SP
Sbjct: 187 GYLHARQLLIHQGVELVPVPVDRDGLDVEQGISR--GREARLAVVTPAHQS-PLGVALSP 243

Query: 238 YYQQQLGLLLGQHPVWLLENDLDSELCYDGPPSTRLRDWIDPRWLLVMGTFEAAVGAEAP 297
             ++ L     +   W++E+D DSE  Y G P   L+       ++  G+F   +     
Sbjct: 244 ARRRALLAWAREQGSWVVEDDYDSEFRYRGQPLAALKRQDGDDRVIYAGSFSKMLFPGLR 303

Query: 298 YAYLLSHDTVLAKAFAERA----FRLAPLRLQALAHMLGKGEIETQLGQQRTDLQRRTQY 353
             YL+    +LA+ F + A     R A L     A  L +G     L + R    +R  Y
Sbjct: 304 LGYLVVPTALLAR-FEQGARVLQQRSAQLLQLTAADFLEQGHFTRHLKKMRQLYAQRRGY 362

Query: 354 LAHVLQSQFGQRVVFDIPQGG 374
           L   L+   G  +  D   GG
Sbjct: 363 LVEALRLHCGAFLRVDEQAGG 383