Pairwise Alignments

Query, 452 a.a., Transcriptional regulator, GntR family from Pseudomonas putida KT2440

Subject, 468 a.a., Uncharacterized HTH-type transcriptional regulator YdcR from Escherichia coli ECRC62

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 111/473 (23%), Positives = 181/473 (38%), Gaps = 49/473 (10%)

Query: 13  RKVYRYLEALIEQ-AAGVGTC--RLPSLRELSRRLRVSLATVQSAYSLLEEEGRVHCLPR 69
           +K  +  E L EQ A+G+     RLPSLR+      +S  TV  AY LLE +G +   P+
Sbjct: 2   KKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLLESQGYIIARPQ 61

Query: 70  SGYYVQNGGKDQAVALARQPPLPTQP---------LLERMLLGHERRLA----------- 109
           SGYYV      QA+ + + P +P            + + +    +  +            
Sbjct: 62  SGYYVA----PQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRL 117

Query: 110 ---RQRDRSVASWEAL------------GSARLRNAVAERYTRCSNQYWHADDVHLAPDV 154
              +Q +RS+A                 G+A LR A+A RY          D++ +    
Sbjct: 118 FPLQQLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYA-LQGITISPDEIVITAGA 176

Query: 155 LALLETLLAALALQGGTALVHSPCCWQVLRALARAGMRVLEAPLDARGNPELHALAKLLG 214
           L  L   L A+   G   +V +PC +  L+AL R  ++ L    D +   +L AL   L 
Sbjct: 177 LEALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQ 236

Query: 215 SEPVSLLIMPSCLGMPQGRLVSPYYQQQLGLLLGQHPVWLLENDLDSELCYDGPPSTRLR 274
             PV    + +    P G  ++P  + QL  LL Q+ V L+E+D+ SEL +        +
Sbjct: 237 EYPVKACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAK 296

Query: 275 DWIDPRWLLVMGTFEAAV--GAEAPYAYLLSHDTVLAKAFAERAFRLAPLRLQALAHMLG 332
            W     +L   +F   +  G    +     H   + +         +     AL   L 
Sbjct: 297 AWDRHDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLALVDYLS 356

Query: 333 KGEIETQLGQQRTDLQRRTQYLAHVLQSQFGQRVVFDIPQGGQMLWVSFCQPLAWDGIAA 392
               +  L + R  L  R Q     L       V       G  LW+   +PL    ++ 
Sbjct: 357 TRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHSDSGYFLWLELPEPLDAGELSL 416

Query: 393 ALAGSALHALPGEQFGLPGHYPQHLAL--IWLGGRPDELQLAVRRLAQALEVR 443
           A     +   PG+ F    ++ +       W  G  +E   AV++L + ++ R
Sbjct: 417 AALTHHISIAPGKMFSTGENWSRFFRFNTAWQWGEREE--QAVKQLGKLIQER 467