Pairwise Alignments

Query, 468 a.a., Outer membrane protein OprJ from Pseudomonas putida KT2440

Subject, 481 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  236 bits (601), Expect = 2e-66
 Identities = 164/475 (34%), Positives = 243/475 (51%), Gaps = 16/475 (3%)

Query: 5   VNRVLPIVLAL-TLAGCSLTPTYQRPEAPVAAEWGDAAGHTGHSVEQLD-----WQAFIV 58
           + RV  + L+L +L+ C++ P +QRP+ P   +W +  G    S    D     W     
Sbjct: 1   MKRVAWLTLSLISLSACTVGPDFQRPQGPQVTQWSEPQGRQAASRAVNDPLQERWWDVFH 60

Query: 59  DPVLRQLVGTALDNNRSLRQTLLDIEQARAQYRIQRADRVPGLNASASGNRQHLPAALSS 118
           D  L  L   AL +N  L+     ++Q+RA  ++  A+R P +NA+    R+       S
Sbjct: 61  DEQLSALTRRALTDNLDLKLASSRLQQSRAVRQVTTAERYPNVNANGDYQRKRNSGKGLS 120

Query: 119 D--GREGVSSTYQVGLSLP-EYEVDLFGRVKSLSDAALEQYLATEEVGRAARIALIAEVS 175
           D  G  G S+  Q  +     +E+D +GRVK  ++AA       E   RA  ++++AE +
Sbjct: 121 DPSGNNGRSAFNQWDMGFSASWELDFWGRVKRETEAADATLQVAENDRRAVLLSVLAETA 180

Query: 176 QAYLALDGAERRQALTRQTLASREDSLALVGQRRAAGTATALDHQEALGLVEQSRAELEV 235
           Q Y+ L G +  +A+T Q L     SL L   R A G AT LD  EA   V    A L  
Sbjct: 181 QNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLADGVATDLDVAEAAAQVAAIEARLPD 240

Query: 236 TVRQQRQAYNALVLLLGSA-EAAKAMPAERPDEPMVLNDIVPGAPSALIERRPDILAAEH 294
             ++Q Q  NAL LL+G   +A  A  ++    P     +  G PS L ERRPDI  AE 
Sbjct: 241 LQQRQDQLINALSLLMGEPPQALHAQLSKDAAVPQTQRQVAIGLPSELAERRPDIRQAEA 300

Query: 295 RLRARNADIGAARAAFFPRISLTGSFGTASAQMSGLFDGGSRSWAFMPQLSLPLFDAGRN 354
           RL A  A IG A+  F+PRI+L+GS G+ + Q+S     GSR++AF PQ SLPLF+ GR 
Sbjct: 301 RLHAATASIGVAKGDFYPRITLSGSLGSQAMQLSDFGSWGSRAFAFGPQFSLPLFNGGRL 360

Query: 355 RAGLSLAEARKDSAVAAYEGAIQVAFREVADALAATDTLRREQAARRALADTSRET---L 411
           +  L+L EA++  A  AY+  +  A+ E+ D L   +     Q  R +LA+  R+    L
Sbjct: 361 QGMLNLREAQQQEAALAYQQTVLRAWHEIDDQLTRYNA---SQLRRDSLAEAVRQNQIAL 417

Query: 412 TLAKARYEGGVDNHLRYLDAQRNSYVNEAAFIEASTQRQLALVNLFRALGGGWPS 466
             A+ +Y  GV + +  L  Q      +  ++++ST   LA+V L++ALGGGW S
Sbjct: 418 RTAQQQYVEGVVDFVNVLTVQSALLATQEQWVDSSTGVSLAMVGLYKALGGGWES 472