Pairwise Alignments

Query, 468 a.a., Outer membrane protein OprJ from Pseudomonas putida KT2440

Subject, 498 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  226 bits (575), Expect = 2e-63
 Identities = 156/471 (33%), Positives = 236/471 (50%), Gaps = 21/471 (4%)

Query: 8   VLPIVLALTLAGCSLTPTYQRPEAPVAAEWGDA---------AGHT----GHSVEQLDWQ 54
           +LP++ AL LAGC+  P+   PE    A++ +          AG T      S  +  W 
Sbjct: 16  LLPLMAALVLAGCATVPS-GLPEIQTTAQFKEQGKDQGATPPAGFTRAVPSESQPRGAWW 74

Query: 55  AFIVDPVLRQLVGTALDNNRSLRQTLLDIEQARAQYRIQRADRVPGLNASASGNRQHLPA 114
               DP L  LV  A  +N  ++     + +ARA  R   ADR+P +   A  NR     
Sbjct: 75  LAFNDPTLNALVEKADIHNNDIQAAAARLAEARALARTADADRLPQIGLGAGANRGAGLD 134

Query: 115 ALSSDGREGVSSTYQVGLSLPEYEVDLFGRVKSLSDAALEQYLATEEVGRAARIALIAEV 174
             ++  R    +      S   YEVDLFGR+   S AA       E + ++ R+A+ A+ 
Sbjct: 135 KATASTRPATMTNIGATFS---YEVDLFGRLSGASKAARLDAAGREALLQSTRLAVQAQT 191

Query: 175 SQAYLALDGAERRQALTRQTLASREDSLALVGQRRAAGTATALDHQEALGLVEQSRAELE 234
           +Q YL L   +  +AL R+ + +  D+L L  +R  AG    LD       V  + ++  
Sbjct: 192 AQTYLQLRALDAERALVREQVEAYRDTLRLSQRREQAGDIAELDVARVQTEVSSTESDAL 251

Query: 235 VTVRQQRQAYNALVLLLGSAEAAKAMPAERPDE-PMVLNDIVPGAPSALIERRPDILAAE 293
              RQ+ Q  +AL +L+G + ++  +   R DE   VL +I  G PS ++ RRPD+ AA+
Sbjct: 252 ALDRQRAQVEHALAVLVGDSASSFGL---RTDEWSTVLPNIPAGVPSTVLMRRPDVSAAQ 308

Query: 294 HRLRARNADIGAARAAFFPRISLTGSFGTASAQMSGLFDGGSRSWAFMPQLSLPLFDAGR 353
             + A  A +G A+AA+FP ISLTG+ G AS ++  LF   +RSW     LSLP+FD GR
Sbjct: 309 SAVLAAQARVGVAQAAWFPDISLTGAAGYASPEIGDLFKWSARSWGVGALLSLPIFDGGR 368

Query: 354 NRAGLSLAEARKDSAVAAYEGAIQVAFREVADALAATDTLRREQAARRALADTSRETLTL 413
             AG+  A A+ D A+A+Y     VAF+EV D LAA   L+ +   +     +++   +L
Sbjct: 369 REAGVQGANAQLDGALASYRTQALVAFQEVEDQLAAIRILQEQSVVQAQAVTSAQRATSL 428

Query: 414 AKARYEGGVDNHLRYLDAQRNSYVNEAAFIEASTQRQLALVNLFRALGGGW 464
           +  RY  G  + L  LDA+R+   N    ++  + +  A V L RA+GGGW
Sbjct: 429 SDTRYRNGYISQLDLLDARRSELRNRRQALQVKSAQYQAAVALVRAIGGGW 479