Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1053 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score =  959 bits (2478), Expect = 0.0
 Identities = 502/1052 (47%), Positives = 698/1052 (66%), Gaps = 12/1052 (1%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            MS+FFI RP FAWV+AL I L G L I  LP+ QYP +AP  I I  +YPGASA+ + ++
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPAIAPTAIDIQVTYPGASAQTVQDT 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            V  +IEQ LNG   L Y  S +NS+G   + VTF  GT+PD+AQV VQN+L  A   +PQ
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNPDIAQVQVQNKLNLATPLLPQ 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V  QG++V ++   FL++  L S  G+      L++Y   NI + + R  GVG  Q F 
Sbjct: 121  EVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDD-LSNYIVSNIQDPISRTAGVGDFQVFG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            S+ AMR+W+DP KL  Y L+  D+++AI  QNVQV  G  G  P     +L AT+  +  
Sbjct: 180  SQYAMRIWLDPSKLNNYQLTPVDVSTAISAQNVQVATGQLGGLPALPGTQLNATIIGKTR 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L T E F  I+++ N DGS VRL DVAR+ +G +NY+++A+ NG PA   A++LA GANA
Sbjct: 240  LQTAEQFGNILMKVNTDGSQVRLKDVARIELGGQNYSIAAQFNGKPASGMAIKLASGANA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + T   ++  +A+L  FFP G++  VPYDT+  V  +I  V+HTL+EA+VLVFLVMFLFL
Sbjct: 300  LDTGKAIRATVAQLEPFFPPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R T++ ++ VPV LLGT  I+   GF++N +TMFGM+LAIG+LVDDAIVVVENVER+
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENVERV 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            MAEE LSP EAT+K+MGQ+ GA++GI LVL+AV LP+AF  GS GVIY+QFS+++  ++ 
Sbjct: 420  MAEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMA 479

Query: 481  FSGFLALTFTPALCATLLKPV-PHGHHE-KAGFFGAFNRGFARVTERYSLLNSELVARAG 538
             S  +AL FTPALCAT+LKP+ P  H + K GFFG FNR F R    Y      ++    
Sbjct: 480  LSVLVALIFTPALCATMLKPIDPEKHGQPKRGFFGWFNRTFDRGVLSYERGVGNMIKHKI 539

Query: 539  RWMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLM 598
               L Y  ++  + + ++R+P AF+P ED G     VQ P G++  RT    + +  FL+
Sbjct: 540  PAFLVYALVIAGMIWLFMRIPAAFLPDEDQGVIFAQVQTPVGSTAERTQKVIDDMRIFLL 599

Query: 599  SRD--------AVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINAQ 650
            +           V + F V+GF+F+G+G ++ LAF   K W +RD + S           
Sbjct: 600  NDKEGEPGEGKGVKSVFTVNGFNFAGRGQSSGLAFVMLKPWDERDASTSVFEIAKRAQGY 659

Query: 651  FAAN-GDGAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVIL 709
            F     D  + A++PP +  LGN+ GF + L D+GG+G + L+AAR+Q L  A  + ++ 
Sbjct: 660  FMQTFKDAMVFAIVPPSVLELGNATGFDVFLQDQGGVGHDKLMAARNQFLGMAAQSKILA 719

Query: 710  YAMMEGLAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQ 769
                 G+ + PQ  L +D EKA A G++  +IN TLA A G + +NDF + GR ++V VQ
Sbjct: 720  GVRPNGVNDEPQYELTVDDEKASAQGITLSSINQTLAIALGGSYVNDFIDRGRVKKVYVQ 779

Query: 770  AEQGERMTPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPG 829
             E   RM+PE + + Y  + +G+ VP SA  + +W  G  +L RYNG  ++ I G  +PG
Sbjct: 780  GEAASRMSPEDLNKWYVRSDSGKMVPLSAIASGKWIFGSPKLSRYNGVAAMEILGTPAPG 839

Query: 830  HSTGQAMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYES 889
            +STG AMAE+ER+  +LP GIGYAWTGLSY+E++S  QA +L+AL++LVVFL L ALYES
Sbjct: 840  YSTGDAMAEVERIAKQLPAGIGYAWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYES 899

Query: 890  WAIPLTVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWE 949
            W+IP+ V+L+VP+G +GA+ A ++ G+ NDV+F+VGL+  +GLAAKNAILIVEFAKEL E
Sbjct: 900  WSIPIAVILVVPLGVVGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHE 959

Query: 950  KGYSLCDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSAT 1009
            +G  + +AAIEA+R+R RPI+MTSMAFILGV+PLAI+SGAG+ SQ AIGTGVIGGM++AT
Sbjct: 960  QGKGIVEAAIEASRMRLRPIIMTSMAFILGVLPLAISSGAGSGSQHAIGTGVIGGMITAT 1019

Query: 1010 LLGVVFVPVCFVWVLTLLKRKPSPVQQAVEEA 1041
            +L + +VP+ F  V    +RK +   +  +EA
Sbjct: 1020 VLAIFWVPLFFATVSAAGERKKTDTTETPKEA 1051