Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1054 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score = 1125 bits (2909), Expect = 0.0
 Identities = 577/1030 (56%), Positives = 753/1030 (73%), Gaps = 3/1030 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M++FFI RP FAWV+ALFI + G + I  LP++QYP VAPP I I  +YPGASA+ + +S
Sbjct: 1    MAKFFIDRPIFAWVIALFILVVGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            V S+IE+ +NG+ GL+Y ES   ++G   + ++FE GT+ D+AQVDVQNRL +A  R+P 
Sbjct: 61   VLSVIEREMNGSPGLIYMESVAQADGTGSITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
            AV  QG++V+++ + FL+   L+S   N  D  AL DYAARN+  EL RV GVG+ Q F 
Sbjct: 121  AVTQQGVRVDKSRNNFLMFVMLSSDNPNF-DPVALGDYAARNVVPELQRVVGVGQAQLFG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            SE AMR+W+DP KL GY LS  D+N+AIR QN QV +G+ G  P    Q + AT+ V G 
Sbjct: 180  SENAMRIWIDPAKLQGYNLSATDVNNAIRAQNAQVSSGTIGDLPNIPGQAIAATVVVNGQ 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L   + F  IVLRAN DGS+VRL DVAR+ +G ++Y  SARLNG PAV   VQ  P  NA
Sbjct: 240  LANVDQFKDIVLRANTDGSTVRLKDVARVELGGQSYATSARLNGVPAVGVGVQPTPNGNA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            +Q+A  ++ ++AEL ++FP+GV++++PYD+SRFV ++I +V+ TL+EA+ LVF+VMFLFL
Sbjct: 300  LQSAKAIRAKMAELERYFPQGVKWAIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN RYT++P+IVVP+ LLGT   +  LGFS+N++TMFGMVL IGI+VDDAIVVVENVER+
Sbjct: 360  QNWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVERI 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            M+EEGLSP+EAT KAM Q+SGAIIG+T+VL +VF+PLAF +GS G IY+QFS  +  SI 
Sbjct: 420  MSEEGLSPLEATRKAMRQISGAIIGVTVVLVSVFVPLAFFAGSTGNIYRQFSAVMVASIG 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGHH-EKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539
            FS F+AL+ TPALCATLLKPV  GHH EK GFFG FNRGF+R  + Y  L + ++ RA R
Sbjct: 480  FSAFMALSLTPALCATLLKPVEAGHHHEKRGFFGWFNRGFSRTAKGYESLVARVLRRAAR 539

Query: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS 599
            +++ YV I+  + ++Y RLP +F+P ED G  +V+VQLPPGA++ R     + +E F++ 
Sbjct: 540  YLVIYVAIIGAVVFTYTRLPSSFLPQEDQGNIIVNVQLPPGATQERALSVMQQVEGFILK 599

Query: 600  RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQR-DKAQSAEAETAAINAQFAANGDGA 658
            +  V +   V GFSFSGQG NA LAF T KDW +R D A SA A         +   D  
Sbjct: 600  QPEVQSMVGVMGFSFSGQGQNAGLAFVTLKDWDERKDPAHSASALAGRAFGALSGIRDAF 659

Query: 659  ITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGLAE 718
            I  + PPPI  LGN+ GF+ RL DR G G EAL+ AR+QLL  A+ + ++     +GL +
Sbjct: 660  IYPLSPPPIPELGNASGFSFRLQDRSGAGHEALINARNQLLGMASQSKILSQVRPDGLED 719

Query: 719  APQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERMTP 778
            APQL++ IDR+KA ALGVSF+AIN+TL+TA GS+ INDF N GR QRVVVQA+   RM P
Sbjct: 720  APQLQIDIDRDKANALGVSFDAINATLSTALGSSYINDFPNRGRLQRVVVQADAPARMQP 779

Query: 779  ESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAMAE 838
            + +L+L A N  G  VP SAF TT+W  G  Q VRYNGYP+IRI+GDA+ G+STG AMAE
Sbjct: 780  DDLLKLNASNTQGLPVPLSAFATTKWVTGATQTVRYNGYPAIRISGDAAAGYSTGAAMAE 839

Query: 839  MERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTVML 898
            ME+L S+LP G G+ WTG S +EK++  QA  L+  AIL VFL L ALYESW+IPL+V+L
Sbjct: 840  MEKLASQLPQGFGFEWTGQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWSIPLSVIL 899

Query: 899  IVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCDAA 958
            +VP+G LG + A  L    NDVYF+VGLITIIGL+AKNAILI+EFAK+L  +G  + ++A
Sbjct: 900  VVPLGVLGVLLATMLRAYSNDVYFQVGLITIIGLSAKNAILIIEFAKDLQAQGKGVIESA 959

Query: 959  IEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFVPV 1018
            + AA LRFRPIVMTS+AF LGV+PL +ASGAG+ASQRAIGTGV+GGM++ T L V+FVPV
Sbjct: 960  LAAAHLRFRPIVMTSLAFGLGVLPLVLASGAGSASQRAIGTGVLGGMVTGTALAVIFVPV 1019

Query: 1019 CFVWVLTLLK 1028
             FV V +L K
Sbjct: 1020 FFVVVRSLFK 1029