Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1042 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  966 bits (2496), Expect = 0.0
 Identities = 508/1037 (48%), Positives = 697/1037 (67%), Gaps = 16/1037 (1%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            ++ FFIHRP FAWV+A+ I LAG + I +LPV+QYP++APP + ++A+YPGASA+ +  S
Sbjct: 2    IANFFIHRPVFAWVIAILIMLAGGVAIRTLPVSQYPDIAPPTVVVSANYPGASAQAVENS 61

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT ++EQ L G  GLLY++ST++S G A++ VTF  G DPD AQV VQN++ QA +R+PQ
Sbjct: 62   VTQVLEQQLKGIDGLLYFKSTSSSAGYADISVTFRQGIDPDTAQVQVQNKVSQATSRLPQ 121

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
            AV  QG+ V ++ + FLLI AL      R DT  +AD+ A N+ + + RV GVG +Q F 
Sbjct: 122  AVQQQGVTVYKSQNNFLLIVALYDETDRRTDTD-VADWMASNLRDPVSRVDGVGSVQAFG 180

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            +  AMR+W+DP +L  Y L   DI +AI  QN QV  G  G+ P  + Q+L AT+     
Sbjct: 181  AAYAMRIWLDPHRLASYQLMPSDITAAITAQNTQVSVGEIGARPSPAGQQLNATVTALSR 240

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L TPE F GIVL+   DG+ VRLGDVAR+ IG+E+Y  + RLNGHPA   A+ LAPGANA
Sbjct: 241  LQTPEQFRGIVLKTQADGAVVRLGDVARVEIGNESYAETTRLNGHPAAGAAIMLAPGANA 300

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + TA  VK R+AE+    P G+  +   DT+RFV ++I+ V+ TL+EA+ LV +VM+LFL
Sbjct: 301  LTTAKAVKARIAEMEPSLPPGLRVAYAEDTTRFVKISIQSVLKTLLEAIALVVVVMYLFL 360

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R T++P+I VPV LLGT  ++   G+S+N++T+FGMVLAIG+LVDDAIVVVENVER+
Sbjct: 361  QNWRATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGMVLAIGLLVDDAIVVVENVERV 420

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            M EEGL    ATIK+M +++GA+IGI LV++AVFLP+ F  GSVGVIY+QFSV++  S+ 
Sbjct: 421  MHEEGLDAKAATIKSMKEITGALIGIALVVSAVFLPMTFFGGSVGVIYRQFSVTIIASMA 480

Query: 481  FSGFLALTFTPALCATLLKP-VPHGHHEKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539
             S  +A+   PALCA  LKP VP       GF GAFNR F     RY  L   ++ +  R
Sbjct: 481  LSVVVAIVLIPALCARFLKPGVP---PRTRGFLGAFNRRFDAAQGRYVGLLGRILRKPLR 537

Query: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLM- 598
            +   Y  I+  +G  YL LP  F+P ED G  +V V LP GA++ RTD    A+EK  + 
Sbjct: 538  FTAVYAAIVAGMGLLYLGLPGGFLPEEDQGSVMVQVSLPAGATQGRTDAVNRAVEKHFLE 597

Query: 599  -SRDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQS-----AEAETAAINAQFA 652
              +D     F ++G+S++G G +  +AF + KDWS+R   Q       E  +AA++ Q  
Sbjct: 598  TEKDTTDTIFTLAGWSYAGSGQHTGMAFVSLKDWSERKDPQKRAQAIVERASAALSKQ-- 655

Query: 653  ANGDGAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAM 712
               D  +  ++PPPI+GLG S GF   L D  G+G + L+  R+ L+  AN +  +    
Sbjct: 656  -QRDAEVYGMVPPPIEGLGQSNGFEFWLQDTSGMGADKLVQKREALVRDANKDKRLQSVR 714

Query: 713  MEGLAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQ 772
               +A  PQL++ ID+ KA AL +S + +N+TL  A+G   +NDF + GR +RV VQA+ 
Sbjct: 715  ANSIANTPQLQVDIDQVKASALRLSLDDVNTTLGIAWGGNYVNDFIDRGRVKRVYVQADA 774

Query: 773  GERMTPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHST 832
              R  PE + + +   + G   PFSAF TT+W +G  QL RYNG P+++I G A+ G S+
Sbjct: 775  PYRSAPEDMGQWFVRGSTGAMTPFSAFATTRWSQGASQLERYNGLPAVQIQGTAAHGTSS 834

Query: 833  GQAMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAI 892
            G AM+ +E  V+    G G+AW+GLSYQE++S GQA  LFA++ILVVFL L ALYESW++
Sbjct: 835  GTAMSAVE-AVARKQTGTGHAWSGLSYQERLSGGQAPLLFAVSILVVFLCLAALYESWSV 893

Query: 893  PLTVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGY 952
            P +VML++P+G LGAV A +L G+ ND+YF+VGL+  IGL+AKNAILI+EFA+    +G 
Sbjct: 894  PFSVMLVIPLGVLGAVIAASLRGLSNDIYFQVGLLATIGLSAKNAILIIEFAEAALRRGV 953

Query: 953  SLCDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLG 1012
             L DA  E ARLR RPI+MTS+AF+ GVVPLA+A+GAG+ASQ AIGTGV GG+L+AT LG
Sbjct: 954  PLLDAVAEGARLRLRPILMTSLAFLAGVVPLALATGAGSASQVAIGTGVFGGVLAATALG 1013

Query: 1013 VVFVPVCFVWVLTLLKR 1029
            + FVP+ ++ V  L  R
Sbjct: 1014 IFFVPLFYLLVKRLAAR 1030