Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score =  989 bits (2557), Expect = 0.0
 Identities = 522/1034 (50%), Positives = 696/1034 (67%), Gaps = 5/1034 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            MS+FFI RP FAWV+AL I L G L I  LP+ QYP++APP I+I  +YPGASA+ + ++
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            V  +IEQ LNG   L Y  S +NS+G   +  TFE GT+PD AQV VQN+L  A   +PQ
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V  QG++V +A   FLL+  L S  G+      LA+Y   N+ + + R  GVG  Q F 
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDD-LANYIVSNMQDPISRTAGVGDFQVFG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            ++ AMR+W+DP KL  + L+  D+ +A+  QNVQV +G  G  P     +L AT+  +  
Sbjct: 180  AQYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTR 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L T E F  I+L+ N DGS VRLGDVA++ +G ENY +SA+ NG PA   AV+LA GANA
Sbjct: 240  LQTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + TA  ++E +  L  FFP GV+   PYDT+  V  +I  VIHTLIEA+VLVFLVM+LFL
Sbjct: 300  LDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R T++ ++ VPV LLGT  I+   GFS+N +TMF MVLAIG+LVDDAIVVVENVER+
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            M+EEGL P EAT ++M Q+ GA++GI LVL+AV LP+AF  GS GVIY+QFS+++  ++ 
Sbjct: 420  MSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMG 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGHHE--KAGFFGAFNRGFARVTERYSLLNSELVARAG 538
             S  +AL FTPALCAT+LKP+  G H   K GFFG FNR F R    Y      ++    
Sbjct: 480  LSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKV 539

Query: 539  RWMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLM 598
             ++LAY  I+V + + + R+P AF+P ED G     VQ P G+S  RT    + + ++L+
Sbjct: 540  PFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLL 599

Query: 599  S--RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINAQFAANGD 656
                D V++ F V+GF+F+G+G ++ +AF   K W +R K  S  A        F    D
Sbjct: 600  KDEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSKENSVFALAQRAQQHFFTFRD 659

Query: 657  GAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGL 716
              + A  PP +  LGN+ GF + L DRGG+G E L+ AR+Q LA+A  + ++      GL
Sbjct: 660  AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVRPNGL 719

Query: 717  AEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERM 776
             + PQ +L ID E+A ALGV+   IN+TL+ A G++ +NDF + GR ++V +Q E   RM
Sbjct: 720  NDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSARM 779

Query: 777  TPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAM 836
            +PE + + Y  N  GE VPFS+F   +W  G  +L RYNG  ++ I G  +PG+STG+AM
Sbjct: 780  SPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAM 839

Query: 837  AEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTV 896
            AE+ER+  ELP GIG++WTG+SY+EK+S  Q  +LFAL++L VFL L ALYESW+IP+ V
Sbjct: 840  AEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIAV 899

Query: 897  MLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCD 956
            +L+VP+G +GA+ A +L G+ NDVYF VGL+T IGLAAKNAILIVEFAKEL E+G SL D
Sbjct: 900  VLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLYD 959

Query: 957  AAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFV 1016
            AAIEA R+R RPI+MTS+AFILGVVPL IASGAGA SQ AIGTGVIGGM+SAT+L + +V
Sbjct: 960  AAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIFWV 1019

Query: 1017 PVCFVWVLTLLKRK 1030
            P+ FV V +L   K
Sbjct: 1020 PLFFVAVSSLFGSK 1033