Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1037 a.a., RND efflux system, inner membrane transporter CmeB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  983 bits (2541), Expect = 0.0
 Identities = 505/1037 (48%), Positives = 699/1037 (67%), Gaps = 5/1037 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M+ FFI RP FAWV+A+ + L G L I SLPV QYP++APP + ITA+YPGASA+ +  +
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENT 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT +IEQ++ G   L+Y  S ++  G A + ++F  GTDPD A   VQN+L+ A  ++PQ
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
            AV  QG+ V +     +L  A  ST G+  D   +ADY A NI + L RV GVG +  + 
Sbjct: 121  AVQDQGVTVRKTGDTNILTIAFVSTDGSM-DKQDIADYVASNIQDPLSRVNGVGDIDAYG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            S+ +MR+W+DP KL  + ++  D+  AI  QN Q+  G  G TP   +Q L AT+  Q  
Sbjct: 180  SQYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSL 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L TP+ F  I LR N DGS V+LGDVA + +G+E Y+  +R NG+PA    V+LA GAN 
Sbjct: 240  LQTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANE 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + TA LV +RL EL+Q+FP G+EY + Y+T+ FV  +I  V+ TL+EA+ LVFLVM+LFL
Sbjct: 300  MATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R TL+P+I VPV L+GT  ++   G+S+N +TMF MVLAIG+LVDDAIVVVENVER+
Sbjct: 360  QNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERI 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            M+EEGL+P EAT K+MGQ+ GA++GI +VL+AVF+P+AF  G+ G IY+QFS+++  +++
Sbjct: 420  MSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMV 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGH-HEKAGFFGAFNRGFARVTERYSLLNSELVARAGR 539
             S  +A+  TPALCATLLKP+  G  H + GFFG FNR F R  ERY    ++++ R+ R
Sbjct: 480  LSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWFNRTFNRNAERYEKGVAKILHRSLR 539

Query: 540  WMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS 599
            W+L YV +L  + + +LRLP +F+P ED G     +QLP G+++ +T    E +E +  +
Sbjct: 540  WILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSIQLPSGSTQQQTLKVVEKVENYYFT 599

Query: 600  --RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQ-SAEAETAAINAQFAANGD 656
              +D + + F   G    G G N A  F   KDW  RD    S+ A        F    +
Sbjct: 600  HEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDARDPTTGSSFAIIERATKAFNQIKE 659

Query: 657  GAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGL 716
              + A  PP I GLG+S GF + L D  G G +AL+AARDQL+  A  N  +      GL
Sbjct: 660  ARVFASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARDQLIELAGKNSSLTRVRHNGL 719

Query: 717  AEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERM 776
             ++PQL++ ID+ KA+ALGVS + IN TL TA+GS+ +NDF + GR ++V VQA    RM
Sbjct: 720  DDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYRM 779

Query: 777  TPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQAM 836
             P+ +   Y  N +G  VPFSAF T++WE G  +L RYNGY ++ I G+A+PG STG AM
Sbjct: 780  LPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAM 839

Query: 837  AEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLTV 896
              ME LV +LP G G  WT +SYQE++S  QA +L+A+++LVVFL L ALYESW++P +V
Sbjct: 840  DVMESLVHQLPGGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSV 899

Query: 897  MLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLCD 956
            ML+VP+G +GA+ A  + G+ NDVYF+VGL+T+IGL+AKNAILIVEFA E+ +KG++L D
Sbjct: 900  MLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHALLD 959

Query: 957  AAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVFV 1016
            A + A+R R RPI+MTS+AFI GV+P+A ++GAG+ SQ A+GTGV+GGM+SAT+L + FV
Sbjct: 960  ATLYASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFV 1019

Query: 1017 PVCFVWVLTLLKRKPSP 1033
            P+ FV +      KP P
Sbjct: 1020 PLFFVLIRRRFPLKPRP 1036