Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1049 a.a., Multidrug efflux pump subunit AcrB from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  998 bits (2579), Expect = 0.0
 Identities = 512/1044 (49%), Positives = 719/1044 (68%), Gaps = 8/1044 (0%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M  FFI RP FAWV+A+ I LAG L I  LPVAQYP +APP ++I+ASYPGA AK + ++
Sbjct: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT +IEQ++NG   L+Y  S ++S G  ++ +TFE GTD D+AQV VQN+L+ A   +PQ
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V  QG+ VE++SS FL++  + +T G       ++DY A N+ + + R  GVG +Q F 
Sbjct: 121  EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQED-ISDYVAANMKDAISRTSGVGDVQLFG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            S+ AMR+W++P +L  + L+  D+ +AI+ QN QV AG  G TP    Q+L A++  Q  
Sbjct: 180  SQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTR 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L + E F  I+L+ N DGS V L DVA++ +G ENY++ A  NG PA    ++LA GANA
Sbjct: 240  LTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + TA  ++  LA++  FFP G++   PYDT+ FV ++I +V+ TL+EA++LVFLVM+LFL
Sbjct: 300  LDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R TL+P+I VPV LLGT  ++   GFS+N +TMFGMVLAIG+LVDDAIVVVENVER+
Sbjct: 360  QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            MAEEGL P EAT K+MGQ+ GA++GI +VL+AVF+P+AF  GS G IY+QFS+++  ++ 
Sbjct: 420  MAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMA 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGHH--EKAGFFGAFNRGFARVTERYSLLNSELVARAG 538
             S  +AL  TPALCAT+LKP+  G H   K GFFG FNR F + T  Y+     ++   G
Sbjct: 480  LSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTG 539

Query: 539  RWMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLM 598
            R+++ Y+ I+V + Y ++RLP +F+P ED G  +  VQLP GA++ RT      +  + +
Sbjct: 540  RYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYL 599

Query: 599  SRDA--VANSFIVSGFSFSGQGDNAALAFPTFKDWSQR-DKAQSAEAETAAINAQFAANG 655
            +++   V + F V+GF F+G+G N  +AF + KDW+ R  +    EA T      F+   
Sbjct: 600  TKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIK 659

Query: 656  DGAITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMM-E 714
            D  + A   P I  LG + GF   L+D+ GLG E L  AR+QLLA A  +P +L ++   
Sbjct: 660  DAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPN 719

Query: 715  GLAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGE 774
            GL + PQ ++ ID+EKA+ALGVS   IN+TL  A+G + +NDF + GR ++V V +E   
Sbjct: 720  GLEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKY 779

Query: 775  RMTPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQ 834
            RM P+ +   Y   A+G+ VPFSAF +++WE G  +L RYNG PS+ I G A+PG STG+
Sbjct: 780  RMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGE 839

Query: 835  AMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPL 894
            AM  ME+L S+LP G+GY WTG+SYQE++S  QA SL+A++++VVFL L ALYESW+IP 
Sbjct: 840  AMELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPF 899

Query: 895  TVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEK-GYS 953
            +VML+VP+G +GA+ A T  G+ NDVYF+VGL+T IGL+AKNAILIVEFAK+L +K G  
Sbjct: 900  SVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG 959

Query: 954  LCDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGV 1013
            L +A ++A R+R RPI+MTS+AFILGV+PL I++GAG+ +Q A+GTGV+GGM++AT+L +
Sbjct: 960  LIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019

Query: 1014 VFVPVCFVWVLTLLKRKPSPVQQA 1037
             FVPV FV V     RK   ++ +
Sbjct: 1020 FFVPVFFVVVRRRFSRKNEDIEHS 1043