Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1053 a.a., multidrug efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  989 bits (2558), Expect = 0.0
 Identities = 513/1029 (49%), Positives = 694/1029 (67%), Gaps = 8/1029 (0%)

Query: 2    SRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVESV 61
            SRFFIHRP FAWV+A+ I LAG L I SLPVAQYPNVAPP I+I A YPGASA  +  SV
Sbjct: 3    SRFFIHRPVFAWVIAIVIMLAGALSIESLPVAQYPNVAPPSIAIKAGYPGASADTLENSV 62

Query: 62   TSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQA 121
            T +IEQ L G  GLLY+ S+++S+G   +  TF  GT+PD AQV VQN+++QA +R+P  
Sbjct: 63   TQVIEQQLTGLDGLLYFSSSSDSSGDVRITATFTQGTNPDTAQVQVQNKVQQATSRLPTE 122

Query: 122  VLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFAS 181
            V  QG+ V ++   FLLI AL  T  ++     +ADY   N+ + L RV GVG +Q F S
Sbjct: 123  VQQQGITVTKSQQDFLLIMALYDTT-DKSTAADIADYMVSNLQDPLSRVEGVGSVQVFGS 181

Query: 182  EAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGTL 241
            + AMR+W+DP KL  Y L   DI+SAI  QN QV AG  G+ P   +Q+LTAT+  Q  L
Sbjct: 182  QYAMRIWLDPIKLAAYSLMPSDISSAIEAQNTQVSAGKIGAQPVGGDQQLTATVTAQSRL 241

Query: 242  DTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANAI 301
             TP  F  I++++   G+ VRLGDVAR+ +G+E+Y  + RLNGHPA   AV L+ GANA+
Sbjct: 242  KTPAQFRDIIVKSESSGAMVRLGDVARVELGNEDYTTATRLNGHPAGGIAVMLSSGANAL 301

Query: 302  QTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQ 361
             TA  VK ++AE +   P+G E S P D++ F+ V++E+V++TL EA+ LV LVMFLFLQ
Sbjct: 302  ATAERVKAKVAEFTPQMPQGYEVSYPKDSTDFIKVSVEEVVYTLFEAIALVVLVMFLFLQ 361

Query: 362  NVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERLM 421
            N+R TL+P++ VPV LLGT  ++ + G+S+N +T+FGMVLAIG+LVDDAIVVVENVERLM
Sbjct: 362  NLRATLIPAVAVPVVLLGTFGVLAVFGYSINTLTLFGMVLAIGLLVDDAIVVVENVERLM 421

Query: 422  AEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSILF 481
             ++GLSPV AT ++M ++S A++G+ LVL+AVFLP+AF  GS GVIY+QFS+++  S+L 
Sbjct: 422  RDQGLSPVAATEQSMREISSALVGVALVLSAVFLPMAFFGGSTGVIYRQFSITIVSSMLL 481

Query: 482  SGFLALTFTPALCATLLKPVPHGHHEKAGFFGAFNRGFARVTERYSLLNSELVARAGRWM 541
            S  +ALT TPALCA LLKPV H      GFF  FNRG+  + +RY+   + ++    R++
Sbjct: 482  SVVVALTLTPALCAALLKPVAHAPSNGNGFFARFNRGYENLQQRYTGRVAHVITGPWRYL 541

Query: 542  LAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS-- 599
              Y  ++VV+G  +LRLP  F+P ED G  +V   LP GA+  RT    E +E + +S  
Sbjct: 542  GLYGLLIVVMGVLFLRLPGGFLPNEDQGDVMVQFTLPAGATETRTSKVGERIEHYFLSEE 601

Query: 600  RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQR-DKAQSAEAETAAINAQFAANGDGA 658
            +D V   F++SGF+FSG G NA +AF   K+WS R   A S+ A         +A  D  
Sbjct: 602  KDNVEAIFVISGFNFSGSGQNAGMAFVALKNWSLRPGSANSSTAIARRAMQALSAIRDAQ 661

Query: 659  ITAVMPPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEGLAE 718
            +  + PP + GLG S GF   L   G   R  LLA RDQLLA A  NP +       L +
Sbjct: 662  VFTMSPPAVQGLGQSDGFTFELQATGNTDRSRLLALRDQLLAEAAKNPRLAAVRPNDLVQ 721

Query: 719  APQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGERMTP 778
             PQL++ +D  K RALG+S   + STL++A+G   +NDF + GR ++V +Q + G R  P
Sbjct: 722  MPQLQVDLDYAKIRALGLSISDVTSTLSSAWGGTYVNDFIDRGRVKKVYIQGDAGSRGQP 781

Query: 779  ESVLRLYAPNA----NGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQ 834
              + + +   A    N    PFSAF  T+W  GP  L RYNG  S  + G  +PG S+G+
Sbjct: 782  SDLDKWFVRGADSSGNSVMTPFSAFAATRWSYGPESLSRYNGLASYELQGTGAPGVSSGK 841

Query: 835  AMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPL 894
            AM EME L   LP G  +AW+ LSYQE+++SGQA SL+A++ILVVFL L ALYESW+IP 
Sbjct: 842  AMDEMEALARALPAGTTFAWSELSYQERLASGQAISLYAMSILVVFLCLAALYESWSIPF 901

Query: 895  TVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSL 954
            +VM+++P+G +GAV A T+ G+ NDVYF+V L+T IGL+AKNAILIVEFA+  + +G +L
Sbjct: 902  SVMMVIPLGVVGAVLAATVRGLENDVYFQVALLTTIGLSAKNAILIVEFAEAAYRRGATL 961

Query: 955  CDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVV 1014
             +AA+E AR R RP++MTSMAFI GV PLA+A+GAGA S+ +IG+G++GG L+AT+L + 
Sbjct: 962  YEAALEGARTRLRPVLMTSMAFIAGVFPLAVATGAGANSRISIGSGIVGGTLTATVLAIF 1021

Query: 1015 FVPVCFVWV 1023
             VP+ FV V
Sbjct: 1022 LVPMFFVLV 1030