Pairwise Alignments

Query, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

Subject, 1049 a.a., multidrug efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  998 bits (2579), Expect = 0.0
 Identities = 514/1047 (49%), Positives = 712/1047 (68%), Gaps = 11/1047 (1%)

Query: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60
            M++FFI RP FAWV+A+ + L G L I  LP+AQYP +APP + ITA+YPGA AK + ++
Sbjct: 1    MAKFFIDRPIFAWVIAIMVMLTGTLAILKLPIAQYPTIAPPAVQITANYPGADAKTLQDT 60

Query: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120
            VT +IEQ++NG   LLY  S ++S+G  ++ +TF+   +PD+AQV VQN+L+ A   +PQ
Sbjct: 61   VTQVIEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQNKLQLAMPLLPQ 120

Query: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180
             V  QG+ V+++SS FL++    S   N      +AD+   +I + + RV GVG  Q F 
Sbjct: 121  EVQQQGVSVQKSSSSFLMVLGFVSDDNNMTPQD-IADFVGASIKDPISRVRGVGDTQLFG 179

Query: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240
            ++ AMR+W+DP KL  Y L+  D+ SAI+ QN Q+ AG  G TP    Q+L A++  Q  
Sbjct: 180  AQYAMRIWLDPDKLNNYQLTTSDVVSAIQVQNNQIAAGQLGGTPPVPGQKLNASIIAQTR 239

Query: 241  LDTPEAFAGIVLRANPDGSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANA 300
            L++PE F  I+L+ N DGS VRL +VA + +G E+YN+ AR NG PA    ++LA GANA
Sbjct: 240  LNSPEQFGNILLKVNQDGSQVRLNNVAHIELGGESYNVIARYNGRPAAGLGIKLATGANA 299

Query: 301  IQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFL 360
            + TA+ VKE + +L   FP G++   PYDT+ FV ++I +V+ TL+EA+VLVF+VM+LFL
Sbjct: 300  LDTASAVKEEITKLQPTFPAGLKVVYPYDTTPFVKISIHEVVKTLLEAIVLVFVVMYLFL 359

Query: 361  QNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVERL 420
            QN R TL+P+I VPV LLGT  I+   G+S+N +TMF MVLAIG+LVDDAIVVVENVER+
Sbjct: 360  QNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 421  MAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSIL 480
            MAEEGLSP EAT K+MGQ+ GA++GI LVL+AVF+P+AF SGS G IY+QFSV++  S++
Sbjct: 420  MAEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFSSGSTGAIYRQFSVTIVSSMV 479

Query: 481  FSGFLALTFTPALCATLLKPVPHGHHEKAGFFGAFNRGFARVTERYSLLNSELVARAGRW 540
             S  +AL  TPALCAT+LKP+ + H EK GFFG FNR F + T  Y+   + ++   GR+
Sbjct: 480  LSVLVALILTPALCATILKPITN-HGEKKGFFGWFNRLFDKSTRHYTNSVANILRSTGRY 538

Query: 541  MLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLMS- 599
            ++ Y+ ++  LG    RLP +F+P ED G  +  +QLP GA++  T      +  + ++ 
Sbjct: 539  VVVYLLVVAGLGLMVTRLPSSFLPQEDQGVLLTMIQLPVGATQESTQKVLAQVNDYYLNS 598

Query: 600  -RDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRDKAQSAEAETAAINAQFAANGDGA 658
             +D V + F V+GF F+G+G N  +AF + KDW +R  A  A    A I   F A     
Sbjct: 599  EKDNVKSVFTVNGFGFAGRGQNMGIAFASLKDWDERSGA--ANKVDAIIGRAFGAFSQIK 656

Query: 659  ITAVMP---PPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNP-VILYAMME 714
               V+P   P I  LG + GF   L+D+  LG + L+AAR+QLL     +P  ++     
Sbjct: 657  EAMVIPFNLPAIIELGTASGFDFELIDQNNLGHDKLIAARNQLLGMIAQHPDTLVRVRPN 716

Query: 715  GLAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGE 774
            G+ + PQ RL ID+EKA +LGVS   IN+TL+TA G   +NDF + GR ++V VQAE   
Sbjct: 717  GMEDMPQYRLEIDQEKAESLGVSISTINATLSTALGGTYVNDFIDRGRVKKVYVQAEAKF 776

Query: 775  RMTPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQ 834
            RM P  + + Y    +G+ VPFSAF ++ WE G  +L RYNG PS+ + G+A+PG STG+
Sbjct: 777  RMLPNDIQKWYVRGTSGQMVPFSAFASSHWEYGSPRLERYNGLPSVELVGEAAPGKSTGE 836

Query: 835  AMAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPL 894
            AMA ME L ++LPPGIG+ WTG+SYQE+++  QA +L  ++ +VVFL L ALYESW+IP 
Sbjct: 837  AMALMEELATQLPPGIGFDWTGMSYQERLAGNQAPALIIISAIVVFLCLAALYESWSIPF 896

Query: 895  TVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEK-GYS 953
            +VML+VP+G  GAV A +L G+ NDVYFKVGL+T IGL+AKNAILIVEFAK+L EK G  
Sbjct: 897  SVMLVVPLGVFGAVMAASLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG 956

Query: 954  LCDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGV 1013
            L +A ++A R+R RPI+MTS+AFILGV PL I+SGAG+ +Q A+GTGV+GGM++AT+L +
Sbjct: 957  LVEATLDAVRMRLRPILMTSLAFILGVAPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1016

Query: 1014 VFVPVCFVWVLTLLKRKPSPVQQAVEE 1040
             FVPV FV V     +K      ++ E
Sbjct: 1017 YFVPVFFVVVRRRFSKKKEADDDSLHE 1043