Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  256 bits (654), Expect = 8e-73
 Identities = 150/365 (41%), Positives = 218/365 (59%), Gaps = 13/365 (3%)

Query: 4   KTGSIRVGALAMAIALAGCEPAAEQDGAAN------ASYPVEIVTLAPEQVALAAELPGR 57
           +TG     A+ +  A+AGC  ++    A        A+  V +VT+ PE   +  EL GR
Sbjct: 17  RTGLACALAIGLLGAIAGCSGSSSSSSALPGAPQGLAAAQVGVVTVQPENQPVTTELSGR 76

Query: 58  VEPMRVAEVRARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQ 117
                 AE+R +V GIV  + FEEGA VKAG VL+Q+DPA +KAA A A+A +A+++A  
Sbjct: 77  TRSRLSAEIRPQVGGIVQQRLFEEGALVKAGQVLYQLDPASYKAAYASAQASVAKSEATV 136

Query: 118 QEAQARVKRYEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAP 177
             A+   +R   L KIEAVS+Q  + + A L+ A A +  A+A ++ AR+NLG+  +TAP
Sbjct: 137 NAAKVTARRNAELAKIEAVSKQTSEDSQATLQQAEADLGVARAALETARINLGFTRITAP 196

Query: 178 ISGRIGRALATEGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGAL---S 234
           I+GRI  +  T GALV   + T +  +QQLDP+Y+D TQS  + L+L++ L  G L   S
Sbjct: 197 IAGRIEASTVTPGALVTASQTTALTTVQQLDPVYVDVTQSTTELLQLQRELAAGTLKNGS 256

Query: 235 ADSQRLTAQV---EGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVR 291
           AD    + ++   +GT +  +G L F+ V+V+ GTG V LR    N + TLLPGMY+R  
Sbjct: 257 ADKAEASVKLLLEDGTTYAHAGRLQFSSVTVNEGTGAVTLRILVPNPERTLLPGMYMRAV 316

Query: 292 TPQGTDNHAILVPQRAVQRGSDGQARVLVATN-GIAEARAVRTGVMQGSRWQITEGLEPG 350
             QG    A+LVPQ+ V R ++G A  LV T+    E RA++     G+RWQ+ EGL+ G
Sbjct: 317 LEQGVAEGALLVPQQGVTRTANGDASALVVTSENKVEKRALKVSRAVGNRWQVIEGLKAG 376

Query: 351 DQVIV 355
           ++VIV
Sbjct: 377 ERVIV 381