Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 421 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  311 bits (797), Expect = 2e-89
 Identities = 181/383 (47%), Positives = 245/383 (63%), Gaps = 16/383 (4%)

Query: 10  VGALAMAIALAGC----EPA-AEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVA 64
           V A+A+ + LAGC     PA A   G A+ +  V +V  AP  V L  ELPGR+E  RVA
Sbjct: 19  VAAVALLV-LAGCGKSDAPAGAGAPGGAHPAPEVGVVVAAPGDVGLVTELPGRLEASRVA 77

Query: 65  EVRARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARV 124
           +VRAR  GI+L + F EG+DVKAG +LF+IDPAP  AAL  A+A LARA+A   +A+A  
Sbjct: 78  QVRARASGILLKREFREGSDVKAGQLLFRIDPAPLAAALQNAQATLARAEANAVQAKALA 137

Query: 125 KRYEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGR 184
            RY+PLV+  AVS+Q++ +A A  ++A A V S +A VQ A++NLGYA VT+PISGRIGR
Sbjct: 138 DRYKPLVEANAVSKQEYATAVASQKTAEADVASGRAAVQTAKINLGYADVTSPISGRIGR 197

Query: 185 ALATEGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLTAQV 244
           AL TEGALVGQGEAT +A +QQ++P+Y++FTQSA D L+LR+AL DG          A V
Sbjct: 198 ALVTEGALVGQGEATELAVVQQINPVYVNFTQSATDVLKLRRALADGQYKRAGSEEAASV 257

Query: 245 -----EGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNH 299
                +G+++   G+L+F+D++VD  TGQ++LR    N  G LLPG+YVRVR  Q    +
Sbjct: 258 RVVLEDGSEYALEGKLLFSDLTVDSTTGQIMLRAEVPNPKGELLPGLYVRVRLEQAQATN 317

Query: 300 AILVPQRAVQRGSDGQARVLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPA 359
           AI +PQ+AV R   G    +V  +G    R V+    + ++W + +GL+ G+QV+V    
Sbjct: 318 AITLPQQAVTRTQQGDTVTVVDKDGKLSKRNVKISAAKDNQWVVLDGLKAGEQVMVDGFQ 377

Query: 360 GL---APGMPV--APAQKQTAAA 377
            L    PG PV   P  K   AA
Sbjct: 378 KLQMMPPGTPVKAVPWTKPNPAA 400