Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 383 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  266 bits (679), Expect = 9e-76
 Identities = 156/369 (42%), Positives = 216/369 (58%), Gaps = 5/369 (1%)

Query: 12  ALAMAIALAGCEPAAEQDGAANASYP-VEIVTLAPEQVALAAELPGRVEPMRVAEVRARV 70
           +L   I LA C   A+Q  AA    P V +VTL    V +  EL GR    RV+EVR +V
Sbjct: 10  SLLSVIVLAAC--GAKQPPAAETPPPEVGVVTLHASDVPVRTELAGRTAAFRVSEVRPQV 67

Query: 71  PGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPL 130
            GIV  + FEEG+ V+AG VL++I+P PF+AA  +A A LA +QA     + +  R+  L
Sbjct: 68  NGIVRKRLFEEGSMVRAGQVLYEIEPGPFEAAHEQARAALATSQASIASLRGKASRFGEL 127

Query: 131 VKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEG 190
           +K  AVS+Q+ + A A L  A A V++AQA V+AAR+NLG+  +TAPI+GRIGR+  TEG
Sbjct: 128 IKANAVSRQEHEEAQAALVQAEAGVKAAQAAVKAARINLGFTRITAPIAGRIGRSSVTEG 187

Query: 191 ALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLTAQVE-GTDF 249
           ALV  G+   +A IQ+LDPIY+D  QS+ +  RL++    G ++  S ++  ++E G  +
Sbjct: 188 ALVVPGQTAALATIQRLDPIYVDVVQSSLELTRLKRRFISGDMAPASTQVGLRMEDGLPY 247

Query: 250 QRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQ 309
             +G L F++V+VD  TG V LR  F N  G LLPGMYVR +   G +  AIL PQR V 
Sbjct: 248 SHTGTLKFSEVAVDPATGSVTLRAEFPNPQGLLLPGMYVRAQVESGVERQAILAPQRGVA 307

Query: 310 RGSDGQARVLVATNG-IAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPVA 368
           R   G+   LV   G   E RA+      G +W +++GL  GD+++V       PG  V 
Sbjct: 308 RNEKGEPTALVVGAGDKVELRALELRTTSGDQWIVSKGLREGDRLVVDGLQRAHPGDKVK 367

Query: 369 PAQKQTAAA 377
           P     A A
Sbjct: 368 PVPVTAAPA 376