Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 377 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  245 bits (626), Expect = 1e-69
 Identities = 150/372 (40%), Positives = 207/372 (55%), Gaps = 8/372 (2%)

Query: 7   SIRVGALAMAIALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEV 66
           S+RV  +A+ I +  C    ++         V +VTLA + V +++ELP R      +EV
Sbjct: 9   SLRVAPIALCILITAC---GQEKAPKKGPVEVGVVTLAAQNVTVSSELPARTVSTMQSEV 65

Query: 67  RARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKR 126
           R ++ G++  + F EG+ V AG  L+QID   ++A+   A+A L  AQA    AQA+ +R
Sbjct: 66  RPQITGVIQKRLFTEGSMVTAGQPLYQIDERLYRASRDEAQAALVSAQATAVAAQAKAQR 125

Query: 127 YEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRAL 186
           Y  L   EAVS QD D   A  R A AAV  A+A +  A +NL +  V APISGRIGR L
Sbjct: 126 YRGLGDTEAVSAQDRDDVIATARQAAAAVGQARASLDTANVNLTFTQVRAPISGRIGRTL 185

Query: 187 ATEGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLTAQV-E 245
            T GALV   +   +  IQQLDPIY+D TQS++  L+LR++L  G     S  +  ++ +
Sbjct: 186 FTPGALVTASQTDPLTTIQQLDPIYVDVTQSSSQLLQLRRSLAAGKTLPASATIRLKLDD 245

Query: 246 GTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQ 305
           GT++   G + F +  VD  +G V LR RF N DG LLPGM+VRV  PQ     AIL PQ
Sbjct: 246 GTEYPLEGRIEFAEPIVDVDSGTVTLRARFPNPDGMLLPGMFVRVVAPQSVVPGAILAPQ 305

Query: 306 RAVQRGSDGQARVLVAT-NGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPG 364
           + + R + G A  LV T +   E R V      G +W IT GL+ GD++IV     + P 
Sbjct: 306 QGIARDAKGNATALVVTKDNKVERRTVTAAQAIGDKWLITAGLKAGDRLIVEGTDKVQPD 365

Query: 365 ---MPVAPAQKQ 373
               PVA A K+
Sbjct: 366 DKVKPVAVAAKK 377