Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  258 bits (660), Expect = 1e-73
 Identities = 157/365 (43%), Positives = 222/365 (60%), Gaps = 25/365 (6%)

Query: 10  VGALAMAIALAGCEPAAEQDGAANASYP-VEIVTLAPEQVALAAELPGRVEPMRVAEVRA 68
           V A+A+A  L+GC+   +++ A  A  P V +VT+ P+   L +ELPGR    RVAEVR 
Sbjct: 11  VSAVALATLLSGCK---KEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRP 67

Query: 69  RVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYE 128
           +V GI+L + F+EG++VK G  L+QIDPA ++A LA A+A+L   +++ +       RY+
Sbjct: 68  QVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSLAE-------RYK 120

Query: 129 PLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALAT 188
            L+  +AVS+Q++D A A+   A A+++SAQ D++       Y  V APISGRIGR+  T
Sbjct: 121 QLIDEQAVSKQEYDDANAKRLQAEASLKSAQIDLR-------YTKVLAPISGRIGRSSFT 173

Query: 189 EGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGAL-----SADSQRLTAQ 243
           EGALV  G+   MA IQQLDPIY+D TQS A+ L+LR+ L+ G L     +A S +L  +
Sbjct: 174 EGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLE 233

Query: 244 VEGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILV 303
            +G+ F++ G L F++V+VD  TG V LR  F N D TLLPGM+V  R   G + +AIL 
Sbjct: 234 -DGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILA 292

Query: 304 PQRAVQRGSDGQARVLVAT-NGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLA 362
           PQ+ V R   G    LV       E R ++     GS W I EGL PGD++I      + 
Sbjct: 293 PQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVR 352

Query: 363 PGMPV 367
           PG+ V
Sbjct: 353 PGVEV 357