Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 408 a.a., efflux RND transporter periplasmic adaptor subunit from Magnetospirillum magneticum AMB-1

 Score =  181 bits (458), Expect = 4e-50
 Identities = 126/359 (35%), Positives = 187/359 (52%), Gaps = 13/359 (3%)

Query: 16  AIALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPGIVL 75
           A+ L G      Q  AA A+ PV + T+A   V + +   GR+  +  AE+R  V G + 
Sbjct: 39  AVLLRGAPGQPAQAAAAQAA-PVTVQTMALRNVQVWSSFSGRMRAVDFAEIRPEVSGRLT 97

Query: 76  HKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLVKIEA 135
             R  +G  VKAGDVLF IDPAPF+AALA+AEA+LA A+     A+  + R   L+K EA
Sbjct: 98  QVRINDGQTVKAGDVLFVIDPAPFEAALAKAEANLATARTNAVFARTELDRAVNLIKTEA 157

Query: 136 VSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGALVGQ 195
           ++Q+ +D      + + +AV +A+A+++ A +NL +A V API+GR+ RA  T G +V  
Sbjct: 158 IAQRLYDERANADKVSHSAVLAAEAELKQAHINLDHAYVKAPIAGRVSRAEITLGNVVQA 217

Query: 196 GE-ATLMARIQQLDPIYIDF---TQSAADALRLRQALKDGALSADSQRLTAQ--VEGTD- 248
           G  A L+  I   D IY DF    Q+    +R +   +D       +R+  Q  V G + 
Sbjct: 218 GPGAPLLTSIVSNDGIYADFEVDEQTYMKGIRTQDGSRD-----KERRIPVQITVRGDEA 272

Query: 249 FQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAV 308
               G +   D  +D  +G +  R RFDN DG L+PGM+V V+   G D  A+LV +RA+
Sbjct: 273 HPYLGTIQSFDNRIDTASGTIRARARFDNGDGALMPGMFVSVKVASGGDEPALLVQERAI 332

Query: 309 QRGSDGQARVLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPV 367
                 +   +V  +G    R V  G        +  GL+ G++VIV     + P M V
Sbjct: 333 GSDQSKKFVYVVGDDGKVAYREVGLGPQVDGSRIVLAGLKAGEKVIVDGLQHVRPNMAV 391