Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 404 a.a., RND multidrug efflux membrane permease from Agrobacterium fabrum C58

 Score =  297 bits (760), Expect = 4e-85
 Identities = 173/361 (47%), Positives = 218/361 (60%), Gaps = 4/361 (1%)

Query: 13  LAMAIALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPG 72
           L   I L GC        AA     V++V + PE++ +  ELPGR+ P R+AEVR RV G
Sbjct: 12  LLTGIVLVGCSDEQASAPAAPPPGAVKVVAVKPEELPITNELPGRIAPTRLAEVRPRVSG 71

Query: 73  IVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLVK 132
           I++ + FE+G+ VK GDVL++ID APF+  +  AE  L RAQA Q +A+    R + L +
Sbjct: 72  IIVERVFEQGSLVKEGDVLYRIDRAPFQVRVDSAEGTLRRAQAAQLQARQTADRQQQLRR 131

Query: 133 IEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGAL 192
               SQQ+FD+A A L  A A V  A+A V  ARLNL YA V APISG IGRA  TEGAL
Sbjct: 132 SNVGSQQEFDNAIALLAQADAEVAVAEAGVAEARLNLQYADVKAPISGVIGRARITEGAL 191

Query: 193 VGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQRLTAQV---EGTDF 249
           V    +  +A IQQLDPIY DFTQ AAD +RLR+AL+DG L          +   +G+ +
Sbjct: 192 VSATGSENLATIQQLDPIYADFTQPAADLIRLRKALQDGQLMTGQNEAEVNLLFDDGSRY 251

Query: 250 QRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQ 309
             SG L+F++ +VD  TGQV LRG F N +G LLPGMYVRV+  QG    A  VPQ+AVQ
Sbjct: 252 PVSGRLLFSEAAVDETTGQVTLRGEFPNPNGDLLPGMYVRVQIQQGIQKAAFAVPQQAVQ 311

Query: 310 RGSDGQARVLVA-TNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPVA 368
           R + GQA VLV       E R V  G   G RW I+EGL+ GD+V+       APG  V 
Sbjct: 312 RDAGGQASVLVVNAEDTVEQRRVSVGRSIGDRWVISEGLDDGDRVVAEGFQKTAPGAKVK 371

Query: 369 P 369
           P
Sbjct: 372 P 372