Pairwise Alignments

Query, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

Subject, 400 a.a., RND multidrug efflux membrane permease from Agrobacterium fabrum C58

 Score =  208 bits (530), Expect = 2e-58
 Identities = 124/371 (33%), Positives = 199/371 (53%), Gaps = 15/371 (4%)

Query: 12  ALAMAIALAGCEPAAEQD-----GAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEV 66
           +L +   LAGC    E       GA     PV ++ +   +  L   LPGR    + AE+
Sbjct: 11  SLCVTAVLAGCSDGGESSKSAGQGAERPPSPVSVIVMKTSEYPLTTVLPGRASAFQTAEI 70

Query: 67  RARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKR 126
           R RV GI+    F+EG++VK GDVL+QI+   + A +A+A+A +A+A+A    AQA + R
Sbjct: 71  RPRVTGIIREIPFKEGSEVKQGDVLYQIEDNTYLAEVAQAKASVAKAEASVPSAQANLAR 130

Query: 127 YEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRAL 186
           YE LV     +Q ++++A   L  A A V   +A ++ A +NL    V AP  G      
Sbjct: 131 YERLVN-SGATQIEYENAKVTLLQAQADVAQTKAALETAEINLDLTKVRAPFDGITSATA 189

Query: 187 ATEGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSADSQ----RLTA 242
            + G +V   + T +  ++++DPIYID  +S+ + LRL++A+  G L  D++     LT 
Sbjct: 190 FSIGNVVTANQTTALTTLRRIDPIYIDLMESSTNLLRLKKAISSGQLGGDTKETGIHLTL 249

Query: 243 QVEGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAIL 302
           + +GT+++  G++  +D++V   TG   +R  F+N D  LLPG YVR     G +     
Sbjct: 250 E-DGTEYKHDGKIDMSDMAVSETTGTFSIRALFENPDDLLLPGTYVRATLTIGKEK-GFR 307

Query: 303 VPQRAVQRGSDGQ--ARVLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAG 360
           +PQRA  R + G+  A+ + A N + E R   +    G+ W +TE ++ GD++IV     
Sbjct: 308 IPQRAASRNASGELTAKFVTAENKV-ETRTFPSSQQSGNAWLVTENVKDGDKLIVDGFQW 366

Query: 361 LAPGMPVAPAQ 371
           +A G  VAP +
Sbjct: 367 IAEGATVAPVE 377