Pairwise Alignments

Query, 804 a.a., putative Transporter from Pseudomonas putida KT2440

Subject, 1038 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 52/230 (22%), Positives = 104/230 (45%), Gaps = 19/230 (8%)

Query: 200 VAFNHRLEK---EIRQQFEDGEFEVQIIGFAKQIGDIADGASAVL-EFCLLALLLTAGAV 255
           V   H ++K   ++R Q  D E   +   F   + +  +G+  +L E  +LA+++    V
Sbjct: 293 VEVGHAVQKALADMRAQRPDIEL-TEAFNFVDPVEEEYNGSLHLLYEGAILAVVV----V 347

Query: 256 YWYCHSLRFTLLALVCSLASLVWQFGSLRLLGYGLDPLAVLVPFLVFAIGVSHGVQQINF 315
           + +    R T ++ V    S++  F  + LLG+ ++ +++L   LV  I V   + ++  
Sbjct: 348 WLFLRDWRATFVSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILVDDAIVEVEN 407

Query: 316 IVREIAIGKSAEEAARSSFTGL---LIPGTLALVTALVSFVTLLLIPIPMVREVAITASL 372
           IVR + +GK+  +AA  +   +   +I  T  L+   +    +  I     ++   TA+L
Sbjct: 408 IVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAAL 467

Query: 373 GVAYKIITNLLMLPLLASMLRVDDRYAAAQEVSRQRRTRWLRGLARLAEW 422
            V   ++   ++ P++A+       Y     V+ +    WLR   R  EW
Sbjct: 468 AVFASLVVARVLTPMMAA-------YMLKPVVTAETEPGWLRWYMRAVEW 510



 Score = 53.5 bits (127), Expect = 6e-11
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 629 EVEKSETPMLLYVYAAIALLVFAVY-RDLRAVLVCCLPLTIGTFIGYWFMKELQIGLTIA 687
           E E + +  LLY  A +A++V  ++ RD RA  V  + L +     +  M  L   + + 
Sbjct: 326 EEEYNGSLHLLYEGAILAVVVVWLFLRDWRATFVSAVALPMSVIPAFIGMHLLGFSVNVI 385

Query: 688 TLPVMVLAVGIGVDYAFYIYNRLQLHLAHGQSITKAVEHALLEVGVATIFTAITL-AVGV 746
           +L  + L VGI VD A      +  HL  G++  +A   A  E+G+A I T  TL AV +
Sbjct: 386 SLLALSLVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFL 445

Query: 747 ATWAFSEL--KFQADMGKLLAFMFIVNMVMAMTVLPAFAVWL 786
            T   S +  KF    G   A     ++V+A  + P  A ++
Sbjct: 446 PTAFMSGIAGKFFKQFGWTAALAVFASLVVARVLTPMMAAYM 487