Pairwise Alignments

Query, 376 a.a., 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) from Pseudomonas putida KT2440

Subject, 355 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 45.1 bits (105), Expect = 3e-09
 Identities = 64/278 (23%), Positives = 92/278 (33%), Gaps = 20/278 (7%)

Query: 109 DREQEFAVLQVVYQAGVKVPRPLWLCRDVRVHGRVFFLMEYVPGSAAGRALST--GAGPQ 166
           D  +E+ +L  +       P+    C D  + G  F++ME V G      +         
Sbjct: 75  DMGREYRILNQLNSGFPYCPKAYAHCTDTGLIGGEFYVMERVKGIILRSDIPAELNLDAS 134

Query: 167 GRAQLATQLGANLARLHQVRPPCATLCFLSVPDSSPALATIDAYRRYLDTLADAYPVLEW 226
               L       L  LHQV      L  L  P+            RY   L    P  E 
Sbjct: 135 RTEALCKSFIDRLVELHQVDYTACGLADLGKPEGYVQRQIEGWTSRYEKALTPDAPRWET 194

Query: 227 GLRWCELHAPRSSTLC-LLHRDYRTGNYLASEEG---LEAVLDWEFTGWGDPCEDLG--- 279
              W     P       ++H DYR  N +   +    +  VLDWE    GDP  DLG   
Sbjct: 195 VTAWLHEKMPADHPRPGIVHNDYRFDNVILDADNPMRIIGVLDWEMATLGDPLMDLGNCL 254

Query: 280 --WFTA----RCWRFTRPDLEAGGIGQLEDFLRGYHEVSSLCIERSRLHYWQVMATLRWA 333
             W  A          R    A G+     F+  Y E + + ++     Y+      R A
Sbjct: 255 AYWIEAGDPTPVQLMRRQPSNAPGMLSRRQFVDYYAERAGIRLD--NFDYYYCYGLFRLA 312

Query: 334 VIALQQGQRHLSGEEPSLELAL---TARLLPELELDIL 368
            I  Q   R+  G+      A      RLL ++ L ++
Sbjct: 313 GIVQQIYYRYYHGQTQDKRFAQFIHMNRLLEQMTLQVI 350