Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 491 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  231 bits (590), Expect = 4e-65
 Identities = 141/335 (42%), Positives = 205/335 (61%), Gaps = 23/335 (6%)

Query: 332 LNGNSKANREMLQLAKRFATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVAINCAA 391
           L G S+A + + Q+ ++ A + +++LI GESGTGKE++A+ +H  S RR GPFV +NC A
Sbjct: 146 LVGTSRAIQHVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRRDGPFVPVNCGA 205

Query: 392 FPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQE 451
            P  LLESELFG+E+GAF+G+    + G FE A+ GTLFLDEIGDMP+ +Q +LLRVLQE
Sbjct: 206 IPAELLESELFGHEKGAFTGAITS-RAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQE 264

Query: 452 REVLRLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERPEDI 511
           R   R+GS +  ++DVRIIAATHK+L S ++ G FR DLY+RLN+  ++  PLRER EDI
Sbjct: 265 RTFERVGSNKTQSVDVRIIAATHKNLESMIEVGSFREDLYYRLNVFPIEMAPLRERVEDI 324

Query: 512 ALICRGISQRLLVQGQPPGAADIPAALLPYLERYAWPGNVRELENVIER-------AMLS 564
            L+   +  R+  + +  G+    +A +  L R+ WPGNVREL N++ER        ++ 
Sbjct: 325 PLLMNELISRM--EHEKRGSIRFNSAAIMSLCRHGWPGNVRELANLVERMAIMHPYGVIG 382

Query: 565 ARELLEEHRV----NEQYLARVLPELCE-----GPPP---SPARKKSSGETDLHTIGKVA 612
             EL ++ R     +EQ +  +  ++ E     G  P   S A     G      +G + 
Sbjct: 383 VVELPKKFRYVDDEDEQLVDSLRTDMEERVAINGHTPDFGSTAMLPPEGLDLKDYLGNLE 442

Query: 613 QLRHVKETLESCRGNLDEAARRLGISRTTLWRRLR 647
           Q   +++ L+   G +  AA RL I RTTL  ++R
Sbjct: 443 Q-GLIQQALDDANGIVARAAERLRIRRTTLVEKMR 476