Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 469 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  250 bits (639), Expect = 9e-71
 Identities = 177/485 (36%), Positives = 250/485 (51%), Gaps = 66/485 (13%)

Query: 195 DTQRVEIAKRRHLNAVLRHIPAGVAAVDNQGVVQSLNPALAQLLDLP-VSAALGRPLQQL 253
           D Q+V     + L  ++     G   VD    +  +N   A+   L     A+G+P +Q+
Sbjct: 9   DYQQVRGLAIQSLFEIIEQSSEGTVIVDRDANIVWMNERYAKRFGLKSADEAIGQPCEQV 68

Query: 254 CPELDLQQA----------LQEGTGEENRVMRLGSH----AVVS-----------NLLPI 288
                L+Q           +Q+       VMRL  H    AV+            NL P+
Sbjct: 69  ISNSLLRQVVRNDQPILLDIQDTPKGPLVVMRLPIHNEAGAVIGAIGFALFDELRNLSPL 128

Query: 289 LENGERTGLVLTCQDITVVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKR 348
           +E        L+ Q      R+  R R ++        Y      G S A+ E+ + A+R
Sbjct: 129 IER------YLSMQQELASTRSLLRSRQSK--------YNFAHFIGTSAASLEVKRRARR 174

Query: 349 FATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGA 408
            A++ S +L+ GE+GTGKELLAQ IH  S R    FV+IN AA P  LLE+E FG   GA
Sbjct: 175 SASAESPVLLLGETGTGKELLAQAIHGASSRAHKAFVSINSAAIPADLLEAEFFGTAPGA 234

Query: 409 FSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVR 468
           F+G+ + G+PG F+ A  GTLFLDEIGDMP+ LQ++LLRVLQE+E   +GS E +  DVR
Sbjct: 235 FTGADRKGRPGKFQIAQGGTLFLDEIGDMPLPLQSKLLRVLQEKEFEPVGSNEMLHSDVR 294

Query: 469 IIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQP 528
           +IAAT  DL +A+  G+FR DLY+RLN+L +Q  PLRER EDI  +   I + L  Q   
Sbjct: 295 VIAATSMDLEAAIKRGEFRADLYYRLNVLPIQVPPLRERLEDIPALSEAILEELRSQ--- 351

Query: 529 PGAADIPAALLPYLERYAWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLP---- 584
               ++    L  L ++AWPGN+REL NV+ERA L + +L+ + R     +    P    
Sbjct: 352 ---HELDREALALLAQHAWPGNIRELRNVLERAALLSDDLVLDAREIRAAIGTFTPVERA 408

Query: 585 ---ELCEGPPPSPARKKSSGETDLHTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTT 641
                 EG   S AR++     D   IG           L +C GN+ EAA RLG+ R+T
Sbjct: 409 SAVAAVEGESFSAARER----FDRQVIG---------AALRACEGNVIEAANRLGLGRST 455

Query: 642 LWRRL 646
           L++++
Sbjct: 456 LYKKM 460