Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

 Score =  266 bits (679), Expect = 3e-75
 Identities = 183/448 (40%), Positives = 245/448 (54%), Gaps = 45/448 (10%)

Query: 210 VLRHIPAGVAAVDNQGVVQSLNPALAQLLDLPVSAALGRPLQQLCPELDLQQALQEGTGE 269
           VL  +  G+  +D +G +++LN    QL  + +   +GRP QQL    +L  ++ E   +
Sbjct: 227 VLEVLNEGLVVLDERGCIKALNRYARQLFGVGLEL-IGRPFQQL-GRSELSDSMGEAVRD 284

Query: 270 ENRVMRLGSHAVVSNLLPI--LENGERTGLVLTCQDITVVQRADQRIRS-TRRPGAFTAR 326
            +    L + + ++ L+ +  LE G           + V  R ++RIR  TRR     A 
Sbjct: 285 RDCTFHLHNRSQLACLVSVCPLEQG----------GVIVSLRENRRIREITRRIIGTQAS 334

Query: 327 YRLDQLNGNSKANREMLQLAKRFATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVA 386
           Y  D + G+S+A ++ L L +  + S ST LI GESGTGKEL AQ IHN S R  GPFVA
Sbjct: 335 YTFDTIQGSSRAIQDALHLGRIASRSDSTTLILGESGTGKELFAQAIHNGSDRCNGPFVA 394

Query: 387 INCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLL 446
           +NC A P  L++SELFG+ EGAF+GS +GG  G FE A  GT+FLDEIGDM    Q  LL
Sbjct: 395 VNCGAIPRDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLL 454

Query: 447 RVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRE 506
           RVLQE E+ R+G+     +DVRIIAATH++L  A+  G FR DLY+RLN+L L   PLR 
Sbjct: 455 RVLQEGEITRVGAKNSRQVDVRIIAATHRNLSQAVAQGAFREDLYYRLNVLNLTVPPLRM 514

Query: 507 RPEDIALICRGI------SQRLLVQGQPPGAADIPAALLPYLERYAWPGNVRELENVIER 560
           R EDI L+ R        S R  VQG  P A       +  L  Y WPGNVRELEN IER
Sbjct: 515 RREDIPLLARHFLARCARSLRKSVQGFSPEA-------MALLSAYGWPGNVRELENSIER 567

Query: 561 AM-LSARELLEEHRVNEQYLARVLPELCEGPPPSPARKKSSGETDLHTIGKVAQLRH-VK 618
           A  L+   L+E   +  +   R      E   P  A+  SS E            RH + 
Sbjct: 568 ATNLAMGALIEPVDLPLENRQRAPLRAYE---PQAAQDLSSHE------------RHAIV 612

Query: 619 ETLESCRGNLDEAARRLGISRTTLWRRL 646
             L +  GN+  AAR+L +SR  L+ ++
Sbjct: 613 AALTNTGGNIRLAARQLNVSRGGLYNKM 640