Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  239 bits (609), Expect = 3e-67
 Identities = 159/398 (39%), Positives = 232/398 (58%), Gaps = 25/398 (6%)

Query: 255 PELDLQQALQEGTGEENR--VMRLGSHAVVSNLLPILENGERTGLVLTCQD---ITVVQR 309
           P +D  Q L +   ++ +  V+ + +HA V   +  +  G    LV   +    + +V+R
Sbjct: 57  PGMDGHQLLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVER 116

Query: 310 -ADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKRFATSHSTILITGESGTGKEL 368
            A  R+     P A               A+R++L+LA R A S ST+LI+GESGTGKE+
Sbjct: 117 HAAGRVTGEEGPVAC------------EPASRQLLELAARVARSDSTVLISGESGTGKEV 164

Query: 369 LAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGT 428
           LA+ IH +SPR   PFVAINCAA P+++LE+ LFG+E+GAF+G+    + G FE A  GT
Sbjct: 165 LARYIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAI-AAQAGKFEQAEGGT 223

Query: 429 LFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRT 488
           L LDEI +MP++LQ +LLRVLQEREV R+G  +PI++D+R++A T++DL   +  G FR 
Sbjct: 224 LLLDEISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFRE 283

Query: 489 DLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQPPGAADIPAALLPYLERYAWP 548
           DLY+RL++  L   PLRERP DI  +   +  R + + +       PAA    L+ YAWP
Sbjct: 284 DLYYRLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAA-RACLQAYAWP 342

Query: 549 GNVRELENVIERAMLSARELLEEHRVNEQYLARVLPELCEGPPPSPARKKSSGETDLHTI 608
           GNVREL+N ++RA++  +  + E    +  LA  +P L  G  PS      +G   L   
Sbjct: 343 GNVRELDNALQRALILQQGGVIE--AADFCLAGAIP-LSAGTEPSLEVVADAG--GLGDD 397

Query: 609 GKVAQLRHVKETLESCRGNLDEAARRLGISRTTLWRRL 646
            +  + + + +TL + RG   EAA RLGIS  TL  +L
Sbjct: 398 MRRHEYQMIIDTLRAERGRRKEAAERLGISPRTLRYKL 435