Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  239 bits (611), Expect = 2e-67
 Identities = 139/319 (43%), Positives = 194/319 (60%), Gaps = 20/319 (6%)

Query: 329 LDQLNGNSKANREMLQLAKRFATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVAIN 388
           LD L G  +     L++A++   +   +L+ GE+GTGKE++A+ +H  SPR   PFVA+N
Sbjct: 334 LDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQASPRADKPFVAVN 393

Query: 389 CAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRV 448
           CAA PE L+ESELFGY EGAF+GSR+GG  G    AH GTLFLDEIGDMP++LQ RLLRV
Sbjct: 394 CAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLALQARLLRV 453

Query: 449 LQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERP 508
           LQER V  LG+ +   IDV +I ATH+DL+  + +  FR DL++R+N + L+   LRER 
Sbjct: 454 LQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNGVSLRLPALRER- 512

Query: 509 EDIALICRGISQRLLVQGQPPGAADIPAALLPYLERYAWPGNVRELENVIERAMLSAREL 568
           +D+A I +G+  +   +G       +  AL   LE + WPGN+R+LE V+ R  L+ RE 
Sbjct: 513 DDLAAIIQGLLDKADARG-----VTLDPALTALLEGFDWPGNIRQLEMVV-RTALAMRED 566

Query: 569 LEEHRVNEQYLARVLPELCEGPPPSPARKKSSGETDLHTIGKVAQLRHVKETLESCRGNL 628
            E+    +     +L EL     PS + K S             +L  ++  L   +GN+
Sbjct: 567 GEQVLTLDHLTDCLLDELASSAAPSGSLKDS-------------ELEQIRGALARHQGNV 613

Query: 629 DEAARRLGISRTTLWRRLR 647
             AA  LGISR TL+R+L+
Sbjct: 614 SAAAAALGISRATLYRKLK 632