Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  242 bits (617), Expect = 5e-68
 Identities = 146/317 (46%), Positives = 200/317 (63%), Gaps = 12/317 (3%)

Query: 336 SKANREMLQLAKRFATSHSTILITGESGTGKELLAQGIHNESPRRQGPFVAINCAAFPES 395
           S+A  ++LQ     A S ST+LI GE+GTGKE++A+ IH  SPRR  P V INCAA P S
Sbjct: 351 SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAIPAS 410

Query: 396 LLESELFGYEEGAFSGSRKGGKPGLFEAAHRGTLFLDEIGDMPVSLQTRLLRVLQEREVL 455
           LLESELFG+++GAF+G+    + G FE A  GTLFLDEIGD+P+ LQ +LLRVLQERE+ 
Sbjct: 411 LLESELFGHDKGAFTGAINTHR-GRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIE 469

Query: 456 RLGSTEPIAIDVRIIAATHKDLRSAMDDGDFRTDLYFRLNILRLQTTPLRERPEDIALIC 515
           RLG +  I ++VR+IAAT++DL   ++D  FR+DL++RLN+  L+  PLR+RPEDI L+ 
Sbjct: 470 RLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLA 529

Query: 516 RGISQRLLVQGQPPGAADIPAALLPYLERYAWPGNVRELENVIERAMLSARELLEEHRVN 575
           +  +Q+ + +        IP   L  L  + WPGNVRELENVIERA+L  R       +N
Sbjct: 530 KHFTQK-MARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLN 588

Query: 576 EQYLARVLPELCEGPPPSPARKK----SSGETDLHTIGKVAQ-LRHVKETLESCRGNLDE 630
            +  +R+LP L E      +  +    ++ E D     ++ Q LR     +   RG    
Sbjct: 589 VRQ-SRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRG---- 643

Query: 631 AARRLGISRTTLWRRLR 647
           AA RLG+ RTTL  R++
Sbjct: 644 AATRLGMKRTTLLSRMQ 660