Pairwise Alignments

Query, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  248 bits (633), Expect = 4e-70
 Identities = 158/406 (38%), Positives = 232/406 (57%), Gaps = 25/406 (6%)

Query: 255 PELDLQQALQEGTGEENR--VMRLGSHAVVSNLLPILENG---------ERTGLVLTCQD 303
           PE+D  +AL+E    E R  V+ + ++A V   +  L  G         +   L L  Q 
Sbjct: 59  PEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQR 118

Query: 304 ITVVQRADQRIRSTRRPGAFTARYRLDQLNGNSKANREMLQLAKRFATSHSTILITGESG 363
              +Q   + IR   +  A +  ++   +  NS A  ++ +   + A S +++LI+GESG
Sbjct: 119 ALQLQSMKKEIRHLHQ--ALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESG 176

Query: 364 TGKELLAQGIHNESPRRQGPFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEA 423
           TGKEL+A+ IH  S R +GPF+ +NCAA PESLLESELFG+E+GAF+G++   + GLFE 
Sbjct: 177 TGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL-RQGLFER 235

Query: 424 AHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGSTEPIAIDVRIIAATHKDLRSAMDD 483
           A+ GTL LDEIG+MP+ LQ +LLR+LQERE  R+G  + I +D+RIIAAT++DL++ + +
Sbjct: 236 ANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKE 295

Query: 484 GDFRTDLYFRLNILRLQTTPLRERPEDIALICRGISQRLLVQGQPPGAADIPAALLPYLE 543
           G FR DL++RLN++ L   PLR+R EDI+L+     Q+   + Q     DI    +  L 
Sbjct: 296 GTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQ-RDIIDIDPMAMSLLT 354

Query: 544 RYAWPGNVRELENVIERAMLSARELLEEHRVNEQYLARVLPELCEGPPPSPARKKSS--G 601
            ++WPGN+REL NVIERA++                +  LP     P  +    K++  G
Sbjct: 355 AWSWPGNIRELSNVIERAVVM--------NSGPIIFSEDLPPQIRQPVCNAGEVKTAPVG 406

Query: 602 ETDLHTIGKVAQLRHVKETLESCRGNLDEAARRLGISRTTLWRRLR 647
           E +L    K  + R + E LE   GN    A  LGISR  L  +L+
Sbjct: 407 ERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQ 452